# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 6.94e-22 1vi0A 206 8.00e-22 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 1.18e-21 1rktA 205 1.21e-21 a.4.1.9,a.121.1.1 97623,97624 2id6A 202 1.29e-21 2f07A 197 1.37e-21 1zkgA 212 1.48e-21 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 2.31e-21 2uxuA 210 2.78e-21 2ibdA 204 3.03e-21 3bcgA 215 3.13e-21 2g7sA 194 3.67e-21 a.4.1.9,a.121.1.1 134737,134738 2rasA 212 3.88e-21 1pb6A 212 4.35e-21 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 5.07e-21 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 5.23e-21 2hyjA 200 5.35e-21 2iekA 200 6.51e-21 3ccyA 203 6.58e-21 2i10A 202 7.00e-21 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 9.09e-21 a.4.1.9,a.121.1.1 134558,134559 3crjA 199 1.05e-20 1t56A 216 1.68e-20 a.4.1.9,a.121.1.1 106428,106429 2qcoA 210 1.86e-20 2fq4A 192 2.53e-20 a.4.1.9,a.121.1.1 133937,133938 2fx0A 201 2.56e-20 a.4.1.9,a.121.1.1 134269,134270 2genA 197 2.60e-20 a.4.1.9,a.121.1.1 135062,135063 1qvtA 194 2.91e-20 a.4.1.9,a.121.1.1 104602,104603 2qtqA 213 3.17e-20 2dg7A 195 3.20e-20 2jj7A 186 3.57e-20 2iaiA 230 4.92e-20 1jt6A 188 5.02e-20 a.4.1.9,a.121.1.1 67247,67248 3cjdA 198 5.17e-20 2hytA 197 5.27e-20 2nx4A 194 6.50e-20 2raeA 207 6.66e-20 2of7A 260 9.63e-20 1ui5A 215 1.08e-19 a.4.1.9,a.121.1.1 107856,107857 2zb9A 214 1.09e-19 3cdlA 203 1.28e-19 2fbqA 235 1.82e-19 a.4.1.9,a.121.1.1 133256,133257 2yveA 185 2.22e-19 3b81A 203 2.42e-19 3c2bA 221 2.73e-19 2dg8A 193 3.62e-19 2eh3A 179 4.62e-19 2np5A 203 4.96e-19 a.4.1.9,a.121.1.1 138424,138425 2hkuA 215 6.27e-19 2q24A 194 6.41e-19 2o7tA 199 7.21e-19 3colA 196 8.12e-19 2qibA 231 9.44e-19 2o7oA 207 9.89e-19 a.4.1.9,a.121.1.1 138930,138931 2iu5A 195 1.32e-18 1sgmA 191 1.81e-18 a.4.1.9,a.121.1.1 105537,105538 3bjbA 207 2.08e-18 3bqyA 209 3.01e-18 2rekA 199 3.45e-18 2fd5A 180 3.66e-18 a.4.1.9,a.121.1.1 133291,133292 3bniA 229 4.60e-18 2guhA 214 5.34e-18 1a6i 217 5.38e-18 2d6yA 202 5.70e-18 a.4.1.9,a.121.1.1 131313,131314 1v7bA 185 5.70e-18 a.4.1.9,a.121.1.1 119861,119862 2vprA 207 9.10e-18 1zk8A 183 1.08e-17 a.4.1.9,a.121.1.1 125177,125178 1t33A 224 1.25e-17 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 1.62e-17 2gfnA 209 4.61e-17 a.4.1.9,a.121.1.1 135101,135102 2oi8A 216 7.31e-17 2qkoA 215 1.16e-16 2zcmA 192 2.93e-16 1z0xA 220 3.52e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 8.66e-16 2g7lA 243 2.05e-15 a.4.1.9,a.121.1.1 134734,134735 2tct 207 7.52e-15 2optA 234 7.53e-15 2hxoA 237 1.85e-14 2id3A 225 5.98e-14 a.4.1.9,a.121.1.1 137261,137262 2g7gA 213 2.91e-11 a.4.1.9,a.121.1.1 134732,134733 2ev0A 142 0.7590 a.4.5.24,a.76.1.1 132413,132414 1pdnC 128 1.377 a.4.1.5 16047 2jn6A 97 1.561 1c0wA 225 1.686 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2dt5A 211 1.926 a.4.5.38,c.2.1.12 131708,131709 6paxA 133 2.242 a.4.1.5,a.4.1.5 64758,64759 2oxoA 103 2.266 2bnmA 198 2.316 a.35.1.3,b.82.1.10 128835,128836 1on2A 142 2.620 a.4.5.24,a.76.1.1 87103,87104 2pjpA 121 2.655 2pg4A 95 2.668 1a5t 334 3.135 1xcbA 211 3.346 a.4.5.38,c.2.1.12 109552,109553 3bbyA 215 3.922 1lccA 51 4.015 a.35.1.5 17110 1cjgA 62 4.708 a.35.1.5 17112 1hlvA 131 4.728 a.4.1.7,a.4.1.7 65854,65855 2bjcA 62 5.583 a.35.1.5 128620 2qq9A 226 6.436 1gulA 222 8.056 a.45.1.1,c.47.1.5 17675,32969 1bi0 226 9.113 1neqA 74 9.634 a.35.1.2 17063 1vf1A 229 9.659 1jkoC 52 10.19 a.4.1.2 66809 3b7hA 78 12.96 1tadA 324 13.17 a.66.1.1,c.37.1.8 18194,32077 1fseA 74 13.45 a.4.6.2 60000 1w07A 659 13.59 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1gwcA 230 13.99 a.45.1.1,c.47.1.5 70660,70661 2hpkA 208 14.32 1zljA 78 14.48 1s7oA 113 15.50 a.4.13.3 105354 1ho8A 480 16.41 a.118.1.9 61107 1wpkA 146 17.49 1f3aA 222 18.05 a.45.1.1,c.47.1.5 17701,32995 1p4wA 99 18.22 a.4.6.2 87783 1ret 43 18.45 3bs3A 76 20.48 1oe8A 211 20.89 a.45.1.1,c.47.1.5 86905,86906 1gseA 221 21.26 a.45.1.1,c.47.1.5 17667,32961 2dtrA 226 21.57 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1je8A 82 22.44 a.4.6.2 77108 1k3yA 221 22.98 a.45.1.1,c.47.1.5 77245,77246 1bl0A 129 23.81 a.4.1.8,a.4.1.8 16053,16054 2blfA 373 24.14 1u8bA 133 25.02 1b1bA 140 25.68 a.4.5.24,a.76.1.1 16215,18421 1k3kA 158 25.99 f.1.4.1 72017 1b0nA 111 26.91 a.34.1.1,a.35.1.3 17001,17064 2ig3A 127 28.16 1wsuA 124 28.31 a.4.5.35,a.4.5.35 121245,121246 1iyhA 198 29.90 a.45.1.1,c.47.1.5 83790,83791 1y9qA 192 30.12 a.35.1.8,b.82.1.15 116592,116593 2cro 71 30.88 1vz0A 230 30.97 a.4.14.1,d.268.1.1 108929,108930 1utxA 66 32.81 a.35.1.3 108034 1lea 84 33.29 2croA 71 35.50 a.35.1.2 17038 3bzcA 785 35.69 1oktA 211 37.16 a.45.1.1,c.47.1.5 93272,93273 1hcrA 52 38.77 a.4.1.2 16020 1yn9A 169 40.11 2auwA 170 40.66 a.35.1.10,d.331.1.1 127339,127340 1m0uA 249 42.30 a.45.1.1,c.47.1.5 78359,78360 2ictA 94 43.93 2gsqA 202 44.70 a.45.1.1,c.47.1.5 17715,33009 1jj2U 70 45.65 a.2.2.1 63106 1hg5A 289 46.32 a.7.8.2,a.118.9.3 90360,90361 2h09A 155 46.89 1rzsA 61 47.41 a.35.1.2 105139 1fx7A 230 48.05 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2scpA 174 48.55 a.39.1.5 17256 1g73A 162 49.54 a.7.4.1 16332 1r69A 69 49.72 a.35.1.2 17028 2aelA 374 50.69 2r1jL 68 50.75 2a9dA 372 51.98 b.1.18.6,d.176.1.1 126431,126432 1rp3A 239 53.17 a.4.13.1,a.4.13.2,a.177.1.1 97678,97679,97680 1adrA 76 53.80 a.35.1.2 17042 2cdnA 201 54.03 c.37.1.1 130289 1y0uA 96 55.19 a.4.5.5 116310 2dtr 226 55.62 2ivmA 150 55.65 3co8A 380 56.69 1fewA 184 57.06 a.7.4.1 16334 1resA 43 58.17 a.4.1.2 16023 1zr5A 214 59.20 c.50.1.2 125525 2fbkA 181 60.94 a.4.5.28 133247 1f5tA 121 61.09 a.4.5.24,a.76.1.1 16203,18409 1pveA 72 62.11 a.189.1.1 104322 1k0dA 260 64.43 a.45.1.1,c.47.1.5 67930,67931 1vfsA 386 65.34 b.49.2.2,c.1.6.1 108584,108585 1b48A 221 65.60 a.45.1.1,c.47.1.5 17703,32997 1fr2A 86 66.55 a.28.2.1 83256 2ebyA 113 67.32 1k78A 149 67.53 a.4.1.5,a.4.1.5 68255,68256 2b8wA 328 68.49 1oyiA 82 69.05 a.4.5.19 93729 1jftA 340 71.48 a.35.1.5,c.93.1.1 66652,66653 1v2aA 210 72.02 a.45.1.1,c.47.1.5 100263,100264 2cohA 202 72.11 a.4.5.4,b.82.3.2 130677,130678 1tr0A 108 72.42 d.58.4.4 107261 1vpwA 340 74.25 a.35.1.5,c.93.1.1 17087,35680 1qpzA 340 75.90 a.35.1.5,c.93.1.1 17097,35673 1mc3A 296 78.51 c.68.1.6 78943 1iqpA 327 79.04 a.80.1.1,c.37.1.20 62649,62650 1ehiA 377 80.35 c.30.1.2,d.142.1.1 31716,41484 1l7vA 326 82.16 f.22.1.1 73672 2vd8A 391 82.54 1sfxA 109 84.24 a.4.5.50 105505 1ib2A 349 85.29 a.118.1.8 62141 1h2eA 207 85.51 c.60.1.1 70857 1efaA 333 86.45 a.35.1.5,c.93.1.1 17106,35691 1r1uA 106 87.48 a.4.5.5 104771 3c8yA 574 87.60 1a3gA 308 89.94 e.17.1.1 43286