# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bcgA 215 4.30e-23 3bhqA 211 5.18e-23 2uxuA 210 5.33e-23 2f07A 197 5.68e-23 1rktA 205 8.36e-23 a.4.1.9,a.121.1.1 97623,97624 1vi0A 206 8.66e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.24e-22 2id6A 202 1.24e-22 3bruA 222 1.43e-22 1pb6A 212 1.71e-22 a.4.1.9,a.121.1.1 88017,88018 3cwrA 208 2.95e-22 1zkgA 212 3.03e-22 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 3.72e-22 a.4.1.9,a.121.1.1 124588,124589 2hyjA 200 6.25e-22 2g7sA 194 6.35e-22 a.4.1.9,a.121.1.1 134737,134738 2ibdA 204 8.07e-22 2rasA 212 1.04e-21 3crjA 199 1.06e-21 3ccyA 203 1.28e-21 2fq4A 192 1.37e-21 a.4.1.9,a.121.1.1 133937,133938 2iekA 200 1.49e-21 2i10A 202 1.96e-21 a.4.1.9,a.121.1.1 136960,136961 2jj7A 186 1.97e-21 2dg7A 195 2.02e-21 2qcoA 210 2.07e-21 1t56A 216 2.28e-21 a.4.1.9,a.121.1.1 106428,106429 2hytA 197 2.45e-21 2g3bA 208 2.80e-21 a.4.1.9,a.121.1.1 134558,134559 2fx0A 201 3.88e-21 a.4.1.9,a.121.1.1 134269,134270 2raeA 207 4.52e-21 2qtqA 213 6.32e-21 2of7A 260 7.57e-21 2genA 197 7.70e-21 a.4.1.9,a.121.1.1 135062,135063 2nx4A 194 7.98e-21 1ui5A 215 1.42e-20 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 1.43e-20 a.4.1.9,a.121.1.1 133256,133257 3cjdA 198 1.46e-20 1qvtA 194 1.52e-20 a.4.1.9,a.121.1.1 104602,104603 2iaiA 230 1.62e-20 3cdlA 203 1.65e-20 2zb9A 214 2.49e-20 1jt6A 188 4.83e-20 a.4.1.9,a.121.1.1 67247,67248 2np5A 203 6.15e-20 a.4.1.9,a.121.1.1 138424,138425 3colA 196 8.45e-20 3b81A 203 9.07e-20 3c2bA 221 1.20e-19 2qibA 231 2.01e-19 2guhA 214 2.23e-19 3bjbA 207 4.23e-19 2q24A 194 4.70e-19 2yveA 185 5.27e-19 2eh3A 179 8.35e-19 2fd5A 180 8.85e-19 a.4.1.9,a.121.1.1 133291,133292 1sgmA 191 1.21e-18 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 1.27e-18 a.4.1.9,a.121.1.1 131313,131314 2o7tA 199 1.87e-18 2qwtA 196 2.32e-18 2dg8A 193 3.23e-18 2rekA 199 3.35e-18 2hkuA 215 3.91e-18 1a6i 217 4.32e-18 1t33A 224 5.27e-18 a.4.1.9,a.121.1.1 106295,106296 1v7bA 185 6.07e-18 a.4.1.9,a.121.1.1 119861,119862 2gfnA 209 7.92e-18 a.4.1.9,a.121.1.1 135101,135102 1zk8A 183 1.00e-17 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 1.91e-17 3bqyA 209 1.95e-17 2o7oA 207 2.65e-17 a.4.1.9,a.121.1.1 138930,138931 2iu5A 195 2.97e-17 2vprA 207 6.53e-17 2oi8A 216 7.69e-17 1z0xA 220 1.86e-16 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 4.07e-16 2zcmA 192 1.09e-15 2tct 207 2.99e-15 2id3A 225 4.40e-15 a.4.1.9,a.121.1.1 137261,137262 2g7lA 243 5.78e-15 a.4.1.9,a.121.1.1 134734,134735 2oerA 214 9.84e-15 2optA 234 2.27e-14 2hxoA 237 1.49e-13 2g7gA 213 9.63e-10 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 2.192 1gwcA 230 7.384 a.45.1.1,c.47.1.5 70660,70661 1bupA 386 9.340 c.55.1.1,c.55.1.1 33377,33378 1ho8A 480 10.29 a.118.1.9 61107 2hpkA 208 11.37 1qnrA 344 14.03 c.1.8.3 28834 2f6hX 419 19.86 2scpA 174 20.86 a.39.1.5 17256 1i5pA 633 22.53 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2obnA 349 25.43 1vf1A 229 27.60 1ba1 386 30.29 3bbyA 215 30.40 2gsoA 393 30.84 1ceoA 343 31.76 c.1.8.3 28808 1gulA 222 32.70 a.45.1.1,c.47.1.5 17675,32969 1m0uA 249 33.53 a.45.1.1,c.47.1.5 78359,78360 2napA 723 35.07 b.52.2.2,c.81.1.1 26926,35334 1fj2A 232 37.00 c.69.1.14 34720 1pgtA 210 37.10 a.45.1.1,c.47.1.5 17515,32809 1ft9A 222 38.22 a.4.5.4,b.82.3.1 16107,28131 1gseA 221 43.67 a.45.1.1,c.47.1.5 17667,32961 1qynA 153 45.89 d.33.1.1 96597 1bccD 241 47.79 a.3.1.3,f.23.11.1 15959,43698 2imiA 221 49.12 2dt5A 211 49.49 a.4.5.38,c.2.1.12 131708,131709 2gsqA 202 53.27 a.45.1.1,c.47.1.5 17715,33009 1kay 381 58.05 1p5tA 127 58.10 b.55.1.2 94148 2b20A 403 59.11 b.1.18.20,c.69.1.2 127685,127686 2h4pA 394 59.34 2osxA 481 65.08 1glqA 209 65.71 a.45.1.1,c.47.1.5 17588,32882 1hg5A 289 66.93 a.7.8.2,a.118.9.3 90360,90361 2bvyA 475 67.46 b.1.18.2,c.1.8.3 129301,129302 1ppjD 241 67.61 a.3.1.3,f.23.11.1 104258,104259 1oqyA 368 68.44 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1egaA 301 69.33 c.37.1.8,d.52.3.1 32150,38836 2vl6A 268 70.54 2ivnA 330 72.15 2cohA 202 77.83 a.4.5.4,b.82.3.2 130677,130678 1fx3A 169 78.31 d.33.1.1 38524 1cpt 412 81.59 2on5A 206 81.66 1neeA 138 81.99 d.241.1.1,g.59.1.1 91841,91842 2zcwA 202 83.21 1apyA 162 85.66 d.153.1.5 42004 1iyhA 198 88.54 a.45.1.1,c.47.1.5 83790,83791 1a5t 334 89.00 2iqhA 499 89.65