# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2f07A 197 9.34e-25 2pbxA 203 9.62e-25 1vi0A 206 1.10e-24 a.4.1.9,a.121.1.1 100720,100721 1rktA 205 1.48e-24 a.4.1.9,a.121.1.1 97623,97624 3bhqA 211 1.51e-24 3bruA 222 2.48e-24 3bcgA 215 2.84e-24 1pb6A 212 3.07e-24 a.4.1.9,a.121.1.1 88017,88018 2id6A 202 3.65e-24 2uxuA 210 3.75e-24 2g7sA 194 4.48e-24 a.4.1.9,a.121.1.1 134737,134738 1zkgA 212 8.70e-24 a.4.1.9,a.121.1.1 125194,125195 2rasA 212 8.84e-24 2ibdA 204 9.68e-24 3ccyA 203 1.04e-23 3crjA 199 1.25e-23 3cwrA 208 1.37e-23 1z77A 200 1.54e-23 a.4.1.9,a.121.1.1 124588,124589 2hyjA 200 2.13e-23 2i10A 202 2.54e-23 a.4.1.9,a.121.1.1 136960,136961 1t56A 216 2.70e-23 a.4.1.9,a.121.1.1 106428,106429 2g3bA 208 2.82e-23 a.4.1.9,a.121.1.1 134558,134559 2iekA 200 3.76e-23 2hytA 197 5.06e-23 2nx4A 194 5.34e-23 2jj7A 186 5.41e-23 2qtqA 213 6.68e-23 2qcoA 210 8.74e-23 2fx0A 201 8.81e-23 a.4.1.9,a.121.1.1 134269,134270 2genA 197 8.93e-23 a.4.1.9,a.121.1.1 135062,135063 2raeA 207 9.55e-23 2dg7A 195 1.00e-22 2fq4A 192 1.24e-22 a.4.1.9,a.121.1.1 133937,133938 2iaiA 230 1.65e-22 1qvtA 194 1.70e-22 a.4.1.9,a.121.1.1 104602,104603 2of7A 260 2.38e-22 3cjdA 198 2.69e-22 1ui5A 215 3.16e-22 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 3.62e-22 a.4.1.9,a.121.1.1 133256,133257 1jt6A 188 4.71e-22 a.4.1.9,a.121.1.1 67247,67248 3cdlA 203 4.92e-22 2zb9A 214 5.18e-22 2np5A 203 9.65e-22 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 1.55e-21 2q24A 194 2.78e-21 3b81A 203 2.86e-21 2eh3A 179 3.07e-21 3bjbA 207 3.59e-21 2dg8A 193 3.69e-21 3colA 196 4.02e-21 2guhA 214 4.45e-21 2qibA 231 6.19e-21 3c2bA 221 7.25e-21 2o7tA 199 7.98e-21 2fd5A 180 1.17e-20 a.4.1.9,a.121.1.1 133291,133292 2d6yA 202 1.55e-20 a.4.1.9,a.121.1.1 131313,131314 1sgmA 191 2.31e-20 a.4.1.9,a.121.1.1 105537,105538 3bniA 229 2.44e-20 2hkuA 215 2.66e-20 2rekA 199 3.97e-20 1v7bA 185 4.52e-20 a.4.1.9,a.121.1.1 119861,119862 2qwtA 196 5.85e-20 1a6i 217 6.39e-20 1t33A 224 7.32e-20 a.4.1.9,a.121.1.1 106295,106296 2o7oA 207 8.65e-20 a.4.1.9,a.121.1.1 138930,138931 1zk8A 183 8.68e-20 a.4.1.9,a.121.1.1 125177,125178 3bqyA 209 9.08e-20 2iu5A 195 1.77e-19 2gfnA 209 1.87e-19 a.4.1.9,a.121.1.1 135101,135102 2vprA 207 3.62e-19 2oi8A 216 1.72e-18 2qkoA 215 2.52e-18 2zcmA 192 5.58e-18 1z0xA 220 8.97e-18 a.4.1.9,a.121.1.1 124334,124335 2g7lA 243 1.21e-16 a.4.1.9,a.121.1.1 134734,134735 2optA 234 1.98e-16 2oerA 214 2.06e-16 2tct 207 3.40e-16 2id3A 225 2.35e-15 a.4.1.9,a.121.1.1 137261,137262 2hxoA 237 1.67e-14 2g7gA 213 9.25e-11 a.4.1.9,a.121.1.1 134732,134733 2oxoA 103 1.650 3bbyA 215 4.174 1ft9A 222 7.305 a.4.5.4,b.82.3.1 16107,28131 1gwcA 230 8.458 a.45.1.1,c.47.1.5 70660,70661 6paxA 133 9.010 a.4.1.5,a.4.1.5 64758,64759 1pdnC 128 10.06 a.4.1.5 16047 1gseA 221 10.48 a.45.1.1,c.47.1.5 17667,32961 1a5t 334 13.32 1vf1A 229 14.14 2ev0A 142 14.76 a.4.5.24,a.76.1.1 132413,132414 2cgpA 210 16.34 a.4.5.4,b.82.3.2 16102,28141 1i6xA 209 16.92 a.4.5.4,b.82.3.2 83673,83674 1ho8A 480 17.64 a.118.1.9 61107 1xrsB 262 18.28 c.23.6.1,d.230.4.1 115884,115885 1fx3A 169 21.55 d.33.1.1 38524 1gulA 222 22.99 a.45.1.1,c.47.1.5 17675,32969 1oe8A 211 24.71 a.45.1.1,c.47.1.5 86905,86906 1k3yA 221 24.88 a.45.1.1,c.47.1.5 77245,77246 1m12A 84 25.09 a.64.1.1 84745 1on2A 142 25.48 a.4.5.24,a.76.1.1 87103,87104 2pg4A 95 26.31 1lccA 51 26.78 a.35.1.5 17110 2bjcA 62 26.82 a.35.1.5 128620 1oqyA 368 28.11 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1omiA 248 28.68 b.82.3.3,a.4.5.4 87079,87080 1c4zA 358 28.90 d.148.1.1 41766 2bbrA 195 30.57 1jr3A 373 31.32 a.80.1.1,c.37.1.20 63245,63246 2f6hX 419 32.11 2sttA 96 32.28 a.4.5.21 16163 2dt5A 211 32.65 a.4.5.38,c.2.1.12 131708,131709 2hpkA 208 32.98 2scpA 174 34.77 a.39.1.5 17256 1cjgA 62 35.24 a.35.1.5 17112 2gsqA 202 35.55 a.45.1.1,c.47.1.5 17715,33009 1b48A 221 35.85 a.45.1.1,c.47.1.5 17703,32997 2fmyA 220 37.67 1y5eA 169 38.43 c.57.1.1 122632 2gauA 232 40.12 a.4.5.4,b.82.3.2 134894,134895 1m0uA 249 40.14 a.45.1.1,c.47.1.5 78359,78360 2d1hA 109 40.20 a.4.5.50 131125 1yn9A 169 40.21 1qynA 153 41.10 d.33.1.1 96597 2pjpA 121 41.63 1f3aA 222 43.01 a.45.1.1,c.47.1.5 17701,32995 1nstA 325 44.30 c.37.1.5 31951 2bvyA 475 44.88 b.1.18.2,c.1.8.3 129301,129302 1j3wA 163 46.35 d.110.7.1 90833 3d0cA 314 46.53 1c0wA 225 47.07 a.4.5.24,a.76.1.1,b.34.1.2 16211,18417,24455 2g3vA 208 47.25 1vkjA 285 47.80 c.37.1.5 108666 1oktA 211 50.11 a.45.1.1,c.47.1.5 93272,93273 2cohA 202 50.44 a.4.5.4,b.82.3.2 130677,130678 2yxoA 267 51.02 2osxA 481 51.46 2q0zX 339 52.12 2zcwA 202 52.26 2jn6A 97 59.23 2zbxA 412 61.63 1tfjA 219 63.10 2fjlA 150 64.67 b.55.1.1 133611 2obnA 349 65.14 1lea 84 67.21 1ceoA 343 67.34 c.1.8.3 28808 1hw5A 210 67.67 a.4.5.4,b.82.3.2 16098,28137 1jj2U 70 68.57 a.2.2.1 63106 1mkzA 172 69.68 c.57.1.1 84998 1bupA 386 70.05 c.55.1.1,c.55.1.1 33377,33378 1y7qA 98 71.07 a.28.3.2 122714 1zybA 232 72.56 a.4.5.4,b.82.3.2 125815,125816 1k3kA 158 75.38 f.1.4.1 72017 2e5aA 347 76.00 1qnrA 344 77.02 c.1.8.3 28834 1vtmP 158 77.42 a.24.5.1 16587 1iyhA 198 78.13 a.45.1.1,c.47.1.5 83790,83791 1pveA 72 81.45 a.189.1.1 104322 3cbuA 214 81.56 2de3A 365 86.32 2vl6A 268 87.09 1tfeA 145 89.04 d.43.1.1 38680