# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 3.76e-15 1pb6A 212 4.31e-15 a.4.1.9,a.121.1.1 88017,88018 1t56A 216 6.76e-15 a.4.1.9,a.121.1.1 106428,106429 1vi0A 206 8.68e-15 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.12e-14 3bruA 222 1.28e-14 3bhqA 211 1.34e-14 1rktA 205 4.32e-14 a.4.1.9,a.121.1.1 97623,97624 1z77A 200 7.03e-14 a.4.1.9,a.121.1.1 124588,124589 2ibdA 204 7.03e-14 2g7sA 194 8.17e-14 a.4.1.9,a.121.1.1 134737,134738 2hyjA 200 1.58e-13 3cdlA 203 1.66e-13 3bcgA 215 2.00e-13 2f07A 197 2.02e-13 2id6A 202 2.15e-13 3crjA 199 2.21e-13 2iaiA 230 3.12e-13 2fq4A 192 4.88e-13 a.4.1.9,a.121.1.1 133937,133938 1qvtA 194 5.20e-13 a.4.1.9,a.121.1.1 104602,104603 2qtqA 213 5.69e-13 3ccyA 203 6.81e-13 1zkgA 212 7.78e-13 a.4.1.9,a.121.1.1 125194,125195 2iekA 200 1.01e-12 2zb9A 214 1.28e-12 1jt6A 188 1.43e-12 a.4.1.9,a.121.1.1 67247,67248 3cjdA 198 1.78e-12 2genA 197 2.04e-12 a.4.1.9,a.121.1.1 135062,135063 2nx4A 194 2.23e-12 2fx0A 201 4.06e-12 a.4.1.9,a.121.1.1 134269,134270 3cwrA 208 5.25e-12 2hytA 197 5.61e-12 2rasA 212 9.34e-12 2o7tA 199 9.57e-12 3b81A 203 1.12e-11 2jj7A 186 1.34e-11 3c2bA 221 1.35e-11 1ui5A 215 2.76e-11 a.4.1.9,a.121.1.1 107856,107857 3colA 196 3.84e-11 2g3bA 208 4.73e-11 a.4.1.9,a.121.1.1 134558,134559 2qibA 231 5.03e-11 2i10A 202 5.09e-11 a.4.1.9,a.121.1.1 136960,136961 2rekA 199 6.77e-11 2qwtA 196 7.88e-11 1sgmA 191 1.07e-10 a.4.1.9,a.121.1.1 105537,105538 2hkuA 215 1.08e-10 2id3A 225 1.10e-10 a.4.1.9,a.121.1.1 137261,137262 2q24A 194 1.49e-10 2qcoA 210 2.03e-10 2d6yA 202 2.08e-10 a.4.1.9,a.121.1.1 131313,131314 2dg7A 195 2.59e-10 2np5A 203 5.48e-10 a.4.1.9,a.121.1.1 138424,138425 1zk8A 183 5.49e-10 a.4.1.9,a.121.1.1 125177,125178 2zcmA 192 7.06e-10 1t33A 224 1.14e-09 a.4.1.9,a.121.1.1 106295,106296 2fbqA 235 2.15e-09 a.4.1.9,a.121.1.1 133256,133257 2eh3A 179 2.21e-09 3bniA 229 4.47e-09 2of7A 260 4.67e-09 2oi8A 216 5.32e-09 2dg8A 193 5.98e-09 3bjbA 207 8.09e-09 2guhA 214 8.82e-09 1v7bA 185 1.06e-08 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.38e-08 a.4.1.9,a.121.1.1 134734,134735 2raeA 207 1.66e-08 3bqyA 209 2.28e-08 2gfnA 209 3.02e-08 a.4.1.9,a.121.1.1 135101,135102 2tct 207 4.44e-08 1z0xA 220 6.51e-08 a.4.1.9,a.121.1.1 124334,124335 2o7oA 207 1.09e-07 a.4.1.9,a.121.1.1 138930,138931 2fd5A 180 1.29e-07 a.4.1.9,a.121.1.1 133291,133292 2vprA 207 2.28e-07 2yveA 185 2.29e-07 1a6i 217 3.00e-07 2optA 234 3.37e-07 2iu5A 195 3.49e-07 2qkoA 215 5.93e-07 2g7gA 213 3.00e-06 a.4.1.9,a.121.1.1 134732,134733 2hxoA 237 5.12e-06 2oerA 214 3.22e-05 1aisB 200 2.154 a.74.1.2,a.74.1.2 18384,18385 1d3uB 201 3.352 a.74.1.2,a.74.1.2 18386,18387 2fdvA 476 3.435 2v9dA 343 4.115 1sh5A 245 5.553 a.40.1.1,a.40.1.1 105543,105544 3c6gA 479 6.420 2d2mC 147 6.937 1c9bA 207 6.968 a.74.1.2,a.74.1.2 18372,18373 2ondA 308 7.646 1ea5A 537 7.661 c.69.1.1 34592 1glqA 209 11.43 a.45.1.1,c.47.1.5 17588,32882 1yzfA 195 12.00 c.23.10.5 124275 1l5oA 356 12.19 c.39.1.1 77711 1rt8A 513 13.10 a.40.1.1 105095 1r8sE 203 14.26 a.118.3.1 97248 1o5kA 306 14.27 c.1.10.1 92504 1pbvA 195 16.15 a.118.3.1 19179 2je8A 848 17.24 1d0vA 356 18.39 c.39.1.1 32476 2q02A 272 19.32 1jr3A 373 19.39 a.80.1.1,c.37.1.20 63245,63246 2hi4A 495 19.72 2gsqA 202 20.28 a.45.1.1,c.47.1.5 17715,33009 2d2mA 140 20.53 2on5A 206 20.64 2r91A 286 20.67 1b48A 221 21.43 a.45.1.1,c.47.1.5 17703,32997 1qagA 226 21.79 a.40.1.1,a.40.1.1 17400,17401 1lvaA 258 22.02 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2aawA 222 22.42 a.45.1.1,c.47.1.5 126496,126497 3cnyA 301 23.26 3bbyA 215 24.78 1ihp 438 24.98 2vr4A 846 26.28 2nuwA 288 27.84 2hyvA 308 28.45 2pbyA 308 28.62 1eg3A 261 28.65 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1j33A 335 28.67 c.39.1.1 77069 1pbv 195 28.74 1zejA 293 30.06 1efaA 333 30.40 a.35.1.5,c.93.1.1 17106,35691 1g3jA 532 30.65 a.118.1.1 19114 2vjxA 846 30.67 1r8mE 203 31.20 a.118.3.1 97242 1oktA 211 33.09 a.45.1.1,c.47.1.5 93272,93273 1ee4A 423 33.40 a.118.1.1 19128 2ejwA 332 33.69 3c8mA 331 35.37 1fdyA 297 35.79 c.1.10.1 29071 1gwcA 230 35.90 a.45.1.1,c.47.1.5 70660,70661 2d2sA 235 36.06 a.118.17.2 131188 1tlqA 189 36.79 a.195.1.1 107134 2pm7A 399 36.86 1fw1A 216 37.41 a.45.1.1,c.47.1.5 60051,60052 1f74A 293 39.80 c.1.10.1 29079 1gulA 222 39.91 a.45.1.1,c.47.1.5 17675,32969 2hnhA 910 40.59 1w3iA 293 40.63 c.1.10.1 109152 1tu7A 208 42.97 a.45.1.1,c.47.1.5 112653,112654 1b4pA 217 43.07 a.45.1.1,c.47.1.5 83158,83159 1gp6A 356 43.63 b.82.2.1 65441 6gsvA 217 43.99 a.45.1.1,c.47.1.5 17633,32925 2p74A 263 44.82 1hg5A 289 45.80 a.7.8.2,a.118.9.3 90360,90361 1hl2A 297 46.89 c.1.10.1 83581 1r9oA 477 47.75 a.104.1.1 104878 2q0zX 339 48.39 2bfdA 400 48.56 6paxA 133 48.80 a.4.1.5,a.4.1.5 64758,64759 1pgtA 210 49.01 a.45.1.1,c.47.1.5 17515,32809 3b4uA 294 49.69 2ehhA 294 50.42 1lbkA 208 50.79 a.45.1.1,c.47.1.5 73809,73810 2pgeA 377 51.88 1v1rA 400 52.27 c.36.1.11 108272 2e7fA 262 53.35 2yr1A 257 54.05 1i2sA 282 54.11 e.3.1.1 71104 1wcgA 464 54.12 c.1.8.4 120888 1sxjE 354 54.79 a.80.1.1,c.37.1.20 106089,106090 1ur4A 399 54.99 c.1.8.3 113402 2btdA 210 56.01 2ivxA 257 56.31 1n2aA 201 56.36 a.45.1.1,c.47.1.5 91553,91554 1xg7A 250 56.83 a.96.1.6 115281 1oqyA 368 58.71 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1wdcC 156 59.53 a.39.1.5 17317 1j8yF 297 60.00 a.24.13.1,c.37.1.10 62747,62748 1tfb 208 62.22 1umdA 367 62.25 c.36.1.11 99599 1crxA 322 62.40 a.60.9.1,d.163.1.1 18097,42157 1tufA 434 62.43 b.49.2.3,c.1.6.1 107335,107336 1volA 204 63.72 a.74.1.2,a.74.1.2 18370,18371 2ogyA 262 63.88 2pvqA 201 66.59 1tw9A 206 67.03 a.45.1.1,c.47.1.5 107381,107382 2gdrA 202 67.46 1od2A 805 67.57 c.14.1.4,c.14.1.4 86821,86822 1nal1 297 67.65 1yvrA 538 68.02 a.118.25.1,c.62.1.5 124116,124117 1p1xA 260 69.47 c.1.10.1 104060 1wa5C 960 70.89 a.118.1.1 114433 1idrA 136 71.30 a.1.1.1 62301 2ovkC 159 71.85 1f3aA 222 72.14 a.45.1.1,c.47.1.5 17701,32995 3bq9A 460 72.45 1hm6A 346 72.59 a.65.1.1 18147 2q9uA 414 72.91 1gm7A 209 73.29 d.153.1.2 65302 1bpoA 494 74.74 a.118.1.4,b.69.6.1 19143,27670 2r8wA 332 75.10 1ad1A 266 77.25 c.1.21.1 29668 1px5A 349 78.88 a.160.1.2,d.218.1.6 95277,95278 1eswA 500 79.71 c.1.8.1 59500 2hnlA 225 79.77 3bct 457 80.09 1wsuA 124 80.44 a.4.5.35,a.4.5.35 121245,121246 1j8mF 297 81.50 a.24.13.1,c.37.1.10 62742,62743 1eywA 331 81.79 c.1.9.3 29057 2gkmA 136 81.83 1r9dA 787 82.02 c.7.1.1 104865 2ak3A 226 82.44 c.37.1.1,g.41.2.1 31892,45193 1jcjA 260 84.53 c.1.10.1 66499 3cerA 343 84.65 1ku1A 230 84.91 a.118.3.1 72996 1dugA 234 85.41 a.45.1.1,c.47.1.5 17718,33012 1yljA 263 86.22 2o2pA 517 86.79 3b55A 451 86.79 1on2A 142 88.79 a.4.5.24,a.76.1.1 87103,87104 2bwjA 199 89.17 2p5tB 253 89.27