Best Alignments for T0454

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2uxuA	6.0521e-26	2uxuA/T0454-2uxuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f07A	2.4754e-25	2f07A/T0454-2f07A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ibdA	3.1816e-25	2ibdA/T0454-2ibdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3c2bA	3.8551e-24	3c2bA/T0454-3c2bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2d6yA	6.0123e-24	2d6yA/T0454-2d6yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
1vi0A	1.2775e-23	1vi0A/T0454-1vi0A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2genA	1.2960e-23	2genA/T0454-2genA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3bhqA	1.4990e-23	3bhqA/T0454-3bhqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t56A	1.5457e-23	1t56A/T0454-1t56A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2g3bA	1.8173e-23	2g3bA/T0454-2g3bA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3cdlA	2.9418e-23	3cdlA/T0454-3cdlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1z77A	3.2642e-23	1z77A/T0454-1z77A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2qcoA	3.3160e-23	2qcoA/T0454-2qcoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qvtA	3.3926e-23	1qvtA/T0454-1qvtA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
1rktA	4.4507e-23	1rktA/T0454-1rktA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
3bcgA	4.5587e-23	3bcgA/T0454-3bcgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2hyjA	7.8891e-23	2hyjA/T0454-2hyjA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g7sA	7.8957e-23	2g7sA/T0454-2g7sA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1
2hkuA	9.8014e-23	2hkuA/T0454-2hkuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jt6A	1.1944e-22	1jt6A/T0454-1jt6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.9 a.121.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001