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Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • T0454 transcriptional regulator, TetR family, Geobacter sulfurreducens PCA, 203 residues
    • gi|40889970|pdb|1VI0|A_4:202 Chain A, Crystal Structure Of A Transcriptional Regulator [Taxonomy]
    • gi|40889971|pdb|1VI0|B Chain B, Crystal Structure Of A Transcriptional Regulator [Taxonomy]
    • gi|170292515|pdb|3CDL|A_7:202 Chain A, Crystal Structure Of A Tetr Family Transcriptional Regulator From Pseudomonas Syringae Pv. Tomato Str. Dc3000
    • gi|170292516|pdb|3CDL|B Chain B, Crystal Structure Of A Tetr Family Transcriptional Regulator From Pseudomonas Syringae Pv. Tomato Str. Dc3000
    • gi|116668079|pdb|2IAI|A_26:227 Chain A, Crystal Structure Of Sco3833, A Member Of The Tetr Transcriptional Regulator Family From Streptomyces Coelicolor A3 [Taxonomy]
    • gi|67464502|pdb|1Z77|A_1:197 Chain A, Crystal Structure Of Transcriptional Regulator Protein From Thermotoga Maritima. [Taxonomy]
    • gi|158428756|pdb|2IEK|A Chain A, New Crystal Form Of Transcriptional Regulator Tm1030 From Thermotoga Maritima [Taxonomy]
    • gi|158428738|pdb|2ID6|A_2:199 Chain A, Crystal Structure Of Transcriptional Regulator (Tm1030) At 1.75a Resolution [Taxonomy]
    • gi|71153832|sp|P0C068|MEPR_PSEPU_7:202 Probable HTH-type transcriptional regulator mepR (Multidrug/solvent efflux pump mepABC operon repressor) [Taxonomy]
    • gi|73535948|pdb|1ZKG|A_15:209 Chain A, Crystal Structure Of Transcriptional Regulator, Tetr Family (Tm1030) From Thermotoga Maritima At 2.30 A Resolution [Taxonomy]
    • gi|73535949|pdb|1ZKG|B Chain B, Crystal Structure Of Transcriptional Regulator, Tetr Family (Tm1030) From Thermotoga Maritima At 2.30 A Resolution [Taxonomy]
    • gi|23127649|ref|ZP_00109514.1|_16:206 COG1309: Transcriptional regulator [Nostoc punctiforme PCC 73102]
    • gi|118138314|pdb|2IBD|A_10:204 Chain A, Crystal Structure Of Probable Transcriptional Regulatory Protein Rha5900 [Taxonomy]
    • gi|118138315|pdb|2IBD|B Chain B, Crystal Structure Of Probable Transcriptional Regulatory Protein Rha5900 [Taxonomy]
    • gi|114794643|pdb|2HYT|A_9:196 Chain A, Crystal Structure Of Tetr-Family Transcriptional Regulator (Yp_049917.1) From Erwinia Cartovora Atroseptica Scri1043 At 1.64 A Resolution [Taxonomy]
    • gi|158428346|pdb|2EH3|A_1:178 Chain A, Crystal Structure Of Aq_1058, A Transcriptional Regulator (TerrACRR FAMILY) FROM AQUIFEX AEOLICUS VF5 [Taxonomy]
    • gi|85544662|pdb|2FBQ|A_3:219 Chain A, The Crystal Structure Of Transcriptional Regulator Pa3006 [Taxonomy]
    • gi|67940406|ref|ZP_00532830.1|_3:206 regulatory protein, TetR [Chlorobium phaeobacteroides BS1]
    • gi|67913381|gb|EAM62805.1| regulatory protein, TetR [Chlorobium phaeobacteroides BS1]
    • gi|151567923|pdb|2Q24|A_12:191 Chain A, Crystal Structure Of Tetr Transcriptional Regulator Sco0520 From Streptomyces Coelicolor [Taxonomy]
    • gi|151567924|pdb|2Q24|B Chain B, Crystal Structure Of Tetr Transcriptional Regulator Sco0520 From Streptomyces Coelicolor [Taxonomy]
    • gi|99032477|pdb|2GEN|A_3:194 Chain A, Structural Genomics, The Crystal Structure Of A Probable Transcriptional Regulator From Pseudomonas Aeruginosa Pao1 [Taxonomy]
    • gi|164519613|pdb|3BRU|A_26:194 Chain A, Crystal Structure Of Regulatory Protein Tetr From Rhodobacter Sphaeroides [Taxonomy]
    • gi|164519614|pdb|3BRU|B Chain B, Crystal Structure Of Regulatory Protein Tetr From Rhodobacter Sphaeroides [Taxonomy]
    • gi|90109718|pdb|2FX0|A_3:200 Chain A, Crystal Structure Of Hlyiir, A Hemolysin Ii Transcriptional Regulator [Taxonomy]
    • gi|51247257|pdb|1QVT|B_4:186 Chain B, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To The Drug Proflavine [Taxonomy]
    • gi|51247258|pdb|1QVT|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To The Drug Proflavine [Taxonomy]
    • gi|51247259|pdb|1QVT|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To The Drug Proflavine [Taxonomy]
    • gi|51247260|pdb|1QVT|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To The Drug Proflavine [Taxonomy]
    • gi|51247261|pdb|1QVU|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Two Drugs: Ethidium And Proflavine [Taxonomy]
    • gi|51247262|pdb|1QVU|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Two Drugs: Ethidium And Proflavine [Taxonomy]
    • gi|51247263|pdb|1QVU|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Two Drugs: Ethidium And Proflavine [Taxonomy]
    • gi|51247264|pdb|1QVU|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Two Drugs: Ethidium And Proflavine [Taxonomy]
    • gi|162330272|pdb|3BHQ|A_8:211 Chain A, Crystal Structure Of Tetr-Family Transcriptional Regulator (Np_105615.1) From Mesorhizobium Loti At 1.54 A Resolution [Taxonomy]
    • gi|162330273|pdb|3BHQ|B Chain B, Crystal Structure Of Tetr-Family Transcriptional Regulator (Np_105615.1) From Mesorhizobium Loti At 1.54 A Resolution [Taxonomy]
    • gi|17943283|pdb|1JTX|B_4:186 Chain B, Crystal Structure Of The Multidrug Binding Transcriptional Regulator Qacr Bound To Crystal Violet [Taxonomy]
    • gi|17943284|pdb|1JTX|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional Regulator Qacr Bound To Crystal Violet [Taxonomy]
    • gi|17943285|pdb|1JTX|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional Regulator Qacr Bound To Crystal Violet [Taxonomy]
    • gi|17943286|pdb|1JTX|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional Regulator Qacr Bound To Crystal Violet [Taxonomy]
    • gi|17943357|pdb|1JUP|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Malachite Green [Taxonomy]
    • gi|17943358|pdb|1JUP|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Malachite Green [Taxonomy]
    • gi|17943359|pdb|1JUP|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Malachite Green [Taxonomy]
    • gi|17943360|pdb|1JUP|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Malachite Green [Taxonomy]
    • gi|17943361|pdb|1JUM|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To The Natural Drug Berberine [Taxonomy]
    • gi|17943362|pdb|1JUM|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To The Natural Drug Berberine [Taxonomy]
    • gi|17943363|pdb|1JUM|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To The Natural Drug Berberine [Taxonomy]
    • gi|17943364|pdb|1JUM|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To The Natural Drug Berberine [Taxonomy]
    • gi|17943365|pdb|1JTY|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional Regulator Qacr Bound To Ethidium [Taxonomy]
    • gi|17943366|pdb|1JTY|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional Regulator Qacr Bound To Ethidium [Taxonomy]
    • gi|17943367|pdb|1JTY|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional Regulator Qacr Bound To Ethidium [Taxonomy]
    • gi|17943368|pdb|1JTY|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional Regulator Qacr Bound To Ethidium [Taxonomy]
    • gi|20150533|pdb|1JT0|A Chain A, Crystal Structure Of A Cooperative Qacr-Dna Complex [Taxonomy]
    • gi|20150534|pdb|1JT0|B Chain B, Crystal Structure Of A Cooperative Qacr-Dna Complex [Taxonomy]
    • gi|20150535|pdb|1JT0|C Chain C, Crystal Structure Of A Cooperative Qacr-Dna Complex [Taxonomy]
    • gi|20150536|pdb|1JT0|D Chain D, Crystal Structure Of A Cooperative Qacr-Dna Complex [Taxonomy]
    • gi|49258752|pdb|1RKW|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Pentamadine [Taxonomy]
    • gi|49258753|pdb|1RKW|B Chain B, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Pentamadine [Taxonomy]
    • gi|49258754|pdb|1RKW|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Pentamadine [Taxonomy]
    • gi|49258755|pdb|1RKW|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Pentamadine [Taxonomy]
    • gi|152148987|pdb|2DTZ|B Chain B, Crystal Structure Of Multidrug Binding Protein Qacr From Staphylococcus Aureus Cocrystallized With Compound Db75 [Taxonomy]
    • gi|152148988|pdb|2DTZ|D Chain D, Crystal Structure Of Multidrug Binding Protein Qacr From Staphylococcus Aureus Cocrystallized With Compound Db75 [Taxonomy]
    • gi|152148989|pdb|2DTZ|A Chain A, Crystal Structure Of Multidrug Binding Protein Qacr From Staphylococcus Aureus Cocrystallized With Compound Db75 [Taxonomy]
    • gi|152148990|pdb|2DTZ|E Chain E, Crystal Structure Of Multidrug Binding Protein Qacr From Staphylococcus Aureus Cocrystallized With Compound Db75 [Taxonomy]
    • gi|152149088|pdb|2HQ5|B Chain B, Crystal Structure Of Multidrug Binding Protein Qacr From Staphylococcus Aureus Cocrystallized With Compound Db359 [Taxonomy]
    • gi|152149089|pdb|2HQ5|D Chain D, Crystal Structure Of Multidrug Binding Protein Qacr From Staphylococcus Aureus Cocrystallized With Compound Db359 [Taxonomy]
    • gi|152149090|pdb|2HQ5|A Chain A, Crystal Structure Of Multidrug Binding Protein Qacr From Staphylococcus Aureus Cocrystallized With Compound Db359 [Taxonomy]
    • gi|152149091|pdb|2HQ5|E Chain E, Crystal Structure Of Multidrug Binding Protein Qacr From Staphylococcus Aureus Cocrystallized With Compound Db359 [Taxonomy]
    • gi|178847028|pdb|2GBY|B Chain B, Structure Of Qacr Multidrug Transcriptional Regulator Bound To Bivalent Diamidine Berenil [Taxonomy]
    • gi|178847029|pdb|2GBY|D Chain D, Structure Of Qacr Multidrug Transcriptional Regulator Bound To Bivalent Diamidine Berenil [Taxonomy]
    • gi|178847030|pdb|2GBY|A Chain A, Structure Of Qacr Multidrug Transcriptional Regulator Bound To Bivalent Diamidine Berenil [Taxonomy]
    • gi|178847031|pdb|2GBY|E Chain E, Structure Of Qacr Multidrug Transcriptional Regulator Bound To Bivalent Diamidine Berenil [Taxonomy]
    • gi|17943371|pdb|1JT6|B_4:186 Chain B, Crystal Structure Of The Multidrug Binding Protein Qacr Bound To Dequalinium [Taxonomy]
    • gi|17943372|pdb|1JT6|D Chain D, Crystal Structure Of The Multidrug Binding Protein Qacr Bound To Dequalinium [Taxonomy]
    • gi|17943373|pdb|1JT6|A Chain A, Crystal Structure Of The Multidrug Binding Protein Qacr Bound To Dequalinium [Taxonomy]
    • gi|17943374|pdb|1JT6|E Chain E, Crystal Structure Of The Multidrug Binding Protein Qacr Bound To Dequalinium [Taxonomy]
    • gi|49258773|pdb|1RPW|A Chain A, Crystal Structure Of The Multidrug Binding Protein Qacr Bound To The Diamidine Hexamidine [Taxonomy]
    • gi|49258774|pdb|1RPW|B Chain B, Crystal Structure Of The Multidrug Binding Protein Qacr Bound To The Diamidine Hexamidine [Taxonomy]
    • gi|49258775|pdb|1RPW|C Chain C, Crystal Structure Of The Multidrug Binding Protein Qacr Bound To The Diamidine Hexamidine [Taxonomy]
    • gi|49258776|pdb|1RPW|D Chain D, Crystal Structure Of The Multidrug Binding Protein Qacr Bound To The Diamidine Hexamidine [Taxonomy]
    • gi|178847024|pdb|2G0E|A Chain A, Structure Of Qacr Multidrug Transcriptional Regulator Bound To Trivalent And Bivalent Diamidine Drugs [Taxonomy]
    • gi|178847025|pdb|2G0E|B Chain B, Structure Of Qacr Multidrug Transcriptional Regulator Bound To Trivalent And Bivalent Diamidine Drugs [Taxonomy]
    • gi|178847026|pdb|2G0E|D Chain D, Structure Of Qacr Multidrug Transcriptional Regulator Bound To Trivalent And Bivalent Diamidine Drugs [Taxonomy]
    • gi|178847027|pdb|2G0E|E Chain E, Structure Of Qacr Multidrug Transcriptional Regulator Bound To Trivalent And Bivalent Diamidine Drugs [Taxonomy]
    • gi|99032498|pdb|2GFN|A_5:194 Chain A, Crystal Structure Of Hth-Type Transcriptional Regulator Pksa Related Protein From Rhodococcus Sp. Rha1 [Taxonomy]
    • gi|99032499|pdb|2GFN|B Chain B, Crystal Structure Of Hth-Type Transcriptional Regulator Pksa Related Protein From Rhodococcus Sp. Rha1 [Taxonomy]
    • gi|23126856|ref|ZP_00108739.1|_12:201 COG1309: Transcriptional regulator [Nostoc punctiforme PCC 73102]
    • gi|170292508|pdb|3CCY|A_11:198 Chain A, Crystal Structure Of A Tetr-Family Transcriptional Regulator From Bordetella Parapertussis 12822 [Taxonomy]
    • gi|93279908|pdb|2G7S|A_4:177 Chain A, The Crystal Structure Of Transcriptional Regulator, Tetr Family, From Agrobacterium Tumefaciens [Taxonomy]
    • gi|178847054|pdb|2JJ7|A_4:167 Chain A, Crystal Structure Of The Hlyiir Mutant Protein With Residues 170-185 Substituted By Alanine [Taxonomy]
    • gi|178847055|pdb|2JJ7|B Chain B, Crystal Structure Of The Hlyiir Mutant Protein With Residues 170-185 Substituted By Alanine [Taxonomy]
    • gi|118137499|pdb|2D6Y|A_4:182 Chain A, Crystal Structure Of Transcriptional Factor Sco4008 From Streptomyces Coelicolor A3(2) [Taxonomy]
    • gi|118137500|pdb|2D6Y|B Chain B, Crystal Structure Of Transcriptional Factor Sco4008 From Streptomyces Coelicolor A3(2) [Taxonomy]
    • gi|51247823|pdb|1UI5|A_5:194 Chain A, Crystal Structure Of Gamma-Butyrolactone Receptor (Arpa Like Protein) [Taxonomy]
    • gi|51247824|pdb|1UI5|B Chain B, Crystal Structure Of Gamma-Butyrolactone Receptor (Arpa Like Protein) [Taxonomy]
    • gi|126031566|pdb|2OF7|A_44:237 Chain A, Structural Genomics, The Crystal Structure Of A Tetr-Family Transcriptional Regulator From Streptomyces Coelicolor A3 [Taxonomy]
    • gi|167994266|ref|ZP_02575358.1|_4:169 hypothetical protein Sententer_01000036_0100022639 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] [Taxonomy]
    • gi|93279855|pdb|2G3B|A_1:168 Chain A, Crystal Structure Of Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp. [Taxonomy]
    • gi|93279856|pdb|2G3B|B Chain B, Crystal Structure Of Putative Tetr-Family Transcriptional Regulator From Rhodococcus Sp [Taxonomy]
    • gi|122921150|pdb|2NX4|A_6:191 Chain A, The Crystal Structure Of Athe Putative Tetr-Family Transcriptional Regulator Rha06780 From Rhodococcus Sp. Rha1. [Taxonomy]
    • gi|122921151|pdb|2NX4|B Chain B, The Crystal Structure Of Athe Putative Tetr-Family Transcriptional Regulator Rha06780 From Rhodococcus Sp. Rha1. [Taxonomy]
    • gi|122921152|pdb|2NX4|C Chain C, The Crystal Structure Of Athe Putative Tetr-Family Transcriptional Regulator Rha06780 From Rhodococcus Sp. Rha1. [Taxonomy]
    • gi|122921153|pdb|2NX4|D Chain D, The Crystal Structure Of Athe Putative Tetr-Family Transcriptional Regulator Rha06780 From Rhodococcus Sp. Rha1 [Taxonomy]
    • gi|126031567|pdb|2OFL|A_37:204 Chain A, Structural Genomics, The Crystal Structure Of A Tetr-Family Transcriptional Regulator From Streptomyces Coelicolor A3(2) [Taxonomy]
    • gi|126031568|pdb|2OFL|B Chain B, Structural Genomics, The Crystal Structure Of A Tetr-Family Transcriptional Regulator From Streptomyces Coelicolor A3(2) [Taxonomy]
    • gi|167013500|pdb|3C07|A_37:204 Chain A, Crystal Structure Of A Tetr Family Transcriptional Regulator From Streptomyces Coelicolor A3(2) [Taxonomy]
    • gi|167013501|pdb|3C07|B Chain B, Crystal Structure Of A Tetr Family Transcriptional Regulator From Streptomyces Coelicolor A3(2) [Taxonomy]
    • gi|56966246|pdb|1U9O|A_40:233 Chain A, Crystal Structure Of The Transcriptional Regulator Ethr In A Ligand Bound Conformation [Taxonomy]
    • gi|56966247|pdb|1U9O|B Chain B, Crystal Structure Of The Transcriptional Regulator Ethr In A Ligand Bound Conformation [Taxonomy]
    • gi|56966245|pdb|1U9N|A_40:233 Chain A, Crystal Structure Of The Transcriptional Regulator Ethr In A Ligand Bound Conformation Opens Therapeutic Perspectives Against Tuberculosis And Leprosy [Taxonomy]
    • gi|116667928|pdb|2I10|A_3:171 Chain A, Putative Tetr Transcriptional Regulator From Rhodococcus Sp. Rha1 [Taxonomy]
    • gi|116667929|pdb|2I10|B Chain B, Putative Tetr Transcriptional Regulator From Rhodococcus Sp. Rha1 [Taxonomy]
    • gi|185178026|pdb|3CRJ|A_13:169 Chain A, Crystal Structure Of A Tetr Transcription Regulator From Haloarcula Marismortui Atcc 43049 [Taxonomy]
    • gi|185178027|pdb|3CRJ|B Chain B, Crystal Structure Of A Tetr Transcription Regulator From Haloarcula Marismortui Atcc 43049 [Taxonomy]
    • gi|185178028|pdb|3CRJ|C Chain C, Crystal Structure Of A Tetr Transcription Regulator From Haloarcula Marismortui Atcc 43049 [Taxonomy]
    • gi|185178029|pdb|3CRJ|D Chain D, Crystal Structure Of A Tetr Transcription Regulator From Haloarcula Marismortui Atcc 43049 [Taxonomy]
    • gi|90109585|pdb|2FQ4|A_8:192 Chain A, The Crystal Structure Of The Transcriptional Regulator (Tetr Family) From Bacillus Cereus [Taxonomy]
    • gi|158430480|pdb|2QWT|A_10:187 Chain A, Crystal Structure Of The Tetr Transcription Regulatory Protein From Mycobacterium Vanbaalenii [Taxonomy]
    • gi|17943353|pdb|1JUS|B_1:162 Chain B, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Rhodamine 6g [Taxonomy]
    • gi|17943354|pdb|1JUS|D Chain D, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Rhodamine 6g [Taxonomy]
    • gi|17943355|pdb|1JUS|A Chain A, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Rhodamine 6g [Taxonomy]
    • gi|17943356|pdb|1JUS|E Chain E, Crystal Structure Of The Multidrug Binding Transcriptional Repressor Qacr Bound To Rhodamine 6g [Taxonomy]