# List of top-scoring protein chains for T0454.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.03e-21 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 1.85e-19 a.4.1.9,a.121.1.1 88017,88018 3cdlA 203 3.54e-19 3bcgA 215 5.01e-19 3bruA 222 1.22e-18 2uxuA 210 2.26e-18 2ibdA 204 4.12e-18 2iaiA 230 1.26e-17 2f07A 197 1.58e-17 2hytA 197 3.80e-17 2genA 197 4.05e-17 a.4.1.9,a.121.1.1 135062,135063 3bhqA 211 4.38e-17 1zkgA 212 7.32e-17 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 7.42e-17 2iekA 200 7.54e-17 2g7sA 194 1.06e-16 a.4.1.9,a.121.1.1 134737,134738 3ccyA 203 2.20e-16 2i10A 202 2.80e-16 a.4.1.9,a.121.1.1 136960,136961 2gfnA 209 5.03e-16 a.4.1.9,a.121.1.1 135101,135102 2eh3A 179 5.87e-16 2nx4A 194 1.23e-15 2pbxA 203 1.44e-15 2q24A 194 1.80e-15 3c07A 273 1.83e-15 2g3bA 208 2.19e-15 a.4.1.9,a.121.1.1 134558,134559 2fx0A 201 2.26e-15 a.4.1.9,a.121.1.1 134269,134270 1ui5A 215 2.40e-15 a.4.1.9,a.121.1.1 107856,107857 3crjA 199 2.81e-15 2d6yA 202 3.90e-15 a.4.1.9,a.121.1.1 131313,131314 1u9nA 236 7.90e-15 a.4.1.9,a.121.1.1 113246,113247 1t56A 216 7.92e-15 a.4.1.9,a.121.1.1 106428,106429 1rktA 205 8.68e-15 a.4.1.9,a.121.1.1 97623,97624 2qwtA 196 1.28e-14 1qvtA 194 1.29e-14 a.4.1.9,a.121.1.1 104602,104603 2of7A 260 1.29e-14 1jt6A 188 1.40e-14 a.4.1.9,a.121.1.1 67247,67248 1rkwA 194 1.44e-14 a.4.1.9,a.121.1.1 104967,104968 2jj7A 186 1.68e-14 1sgmA 191 1.70e-14 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 1.97e-14 a.4.1.9,a.121.1.1 133256,133257 2qibA 231 2.02e-14 2fq4A 192 2.16e-14 a.4.1.9,a.121.1.1 133937,133938 2zcmA 192 5.06e-14 3cjdA 198 6.49e-14 2zcnA 192 8.04e-14 2hyjA 200 9.28e-14 2qcoA 210 1.22e-13 2raeA 207 1.69e-13 2qtqA 213 1.77e-13 2np5A 203 2.39e-13 a.4.1.9,a.121.1.1 138424,138425 2rekA 199 5.30e-13 2zb9A 214 6.00e-13 3bniA 229 9.60e-13 2np3A 212 1.40e-12 a.4.1.9,a.121.1.1 138420,138421 2guhA 214 1.64e-12 3bjbA 207 1.93e-12 2id3A 225 2.11e-12 a.4.1.9,a.121.1.1 137261,137262 3b81A 203 2.27e-12 2oerA 214 3.29e-12 3cwrA 208 5.77e-12 2rasA 212 7.45e-12 2pz9A 226 1.24e-11 2dg8A 193 1.90e-11 3colA 196 1.91e-11 3c2bA 221 1.99e-11 2fd5A 180 2.18e-11 a.4.1.9,a.121.1.1 133291,133292 2dg7A 195 4.78e-11 1t33A 224 8.01e-11 a.4.1.9,a.121.1.1 106295,106296 2dh0A 183 1.14e-10 1v7bA 185 1.23e-10 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 1.24e-10 2yvhA 177 1.31e-10 2ns7A 208 1.47e-10 1zk8A 183 2.01e-10 a.4.1.9,a.121.1.1 125177,125178 2o7oA 207 2.41e-10 a.4.1.9,a.121.1.1 138930,138931 2tctA 207 2.80e-10 a.4.1.9,a.121.1.1 16063,19240 2trtA 217 2.99e-10 a.4.1.9,a.121.1.1 16064,19241 3bqyA 209 3.06e-10 1qpiA 203 3.37e-10 a.4.1.9,a.121.1.1 16072,19249 2oi8A 216 4.55e-10 2hxiA 241 6.13e-10 1a6iA 217 1.28e-09 a.4.1.9,a.121.1.1 16066,19243 1z0xA 220 1.39e-09 a.4.1.9,a.121.1.1 124334,124335 2o7tA 199 1.39e-09 2qkoA 215 1.84e-09 2hkuA 215 3.29e-09 2vprA 207 3.55e-09 2hxoA 237 3.52e-08 2g7lA 243 3.76e-08 a.4.1.9,a.121.1.1 134734,134735 2optA 234 1.74e-07 2iu5A 195 5.27e-07 2g7gA 213 5.94e-07 a.4.1.9,a.121.1.1 134732,134733 1zt2A 330 2.630 d.264.1.1 125624 2e85A 159 4.536 2i8lA 156 4.625 1pveA 72 8.516 a.189.1.1 104322 1hlvA 131 10.02 a.4.1.7,a.4.1.7 65854,65855 2pg4A 95 11.25 1pruA 56 15.71 a.35.1.5 17104 2zaiA 497 15.99 1mhyD 521 18.34 a.25.1.2 16780 1pufB 73 19.91 a.4.1.1 95132 1du6A 64 20.89 a.4.1.1 16002 1b72B 87 22.02 a.4.1.1 16001 1b8iB 63 24.68 a.4.1.1 16011 2dvyA 226 27.50 2yyvA 227 27.58 1q1vA 70 30.52 a.159.4.1 104479 3c7nA 668 33.65 2qxlA 658 33.65 1lfuP 82 38.66 a.4.1.1 77939 1uscA 178 46.42 b.45.1.2 99860 2e0zA 345 47.49 1s7oA 113 47.96 a.4.13.3 105354 3cjeA 167 49.00 2qsjA 154 49.01 1kftA 78 50.25 a.60.2.3 77375 1j4zA 547 51.90 a.129.1.1,c.8.5.1,d.56.1.1 90838,90839,90840 1uxcA 65 52.03 a.35.1.5 17119 2bjcA 62 53.97 a.35.1.5 128620 1kp8A 547 54.16 a.129.1.1,c.8.5.1,d.56.1.1 84414,84415,84416 2eu1A 548 54.30 1svtA 524 54.90 1sx3A 525 55.35 1ss8A 524 55.38 1xckA 547 55.72 1gr5A 547 56.09 i.16.1.1 65478 2f4mB 61 62.07 a.189.1.1 132931 3buhA 409 64.21 2fdpA 388 64.84 b.50.1.2 133316 2g94A 389 64.99 b.50.1.2 134790 1fknA 391 65.12 b.50.1.2 26879 2iqgA 406 65.26 b.50.1.2 137588 2qp8A 395 65.43 2q15A 385 66.42 2vijA 392 66.75 2q11A 388 66.83 1ym4A 408 67.06 b.50.1.2 123682 1ym2A 402 67.07 b.50.1.2 123679 2nwuA 155 67.08 2ohqA 402 67.33 b.50.1.2 139075 2zhvA 411 67.68 3ckpA 412 67.98 1w50A 411 68.01 b.50.1.2 109173 2eueA 275 71.26 2o5hA 136 75.29 2ph8A 405 77.72 2fh9A 274 77.95 1oqyA 368 78.16 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2qzlA 411 79.59 1lccA 51 80.14 a.35.1.5 17110 1z1yA 186 81.15 1h3jA 342 81.22 a.93.1.1 83469 2rhbA 353 82.26 1oelA 547 82.82 a.129.1.1,c.8.5.1,d.56.1.1 19452,30781,38900 1grlA 548 83.05 a.129.1.1,c.8.5.1,d.56.1.1 19487,30816,38935 2e3bA 344 83.06 a.93.1.1 132024 1lykA 343 85.87 a.93.1.1 74346 1ud9A 245 85.88 d.131.1.2,d.131.1.2 107768,107769 2jn6A 97 86.76 1dk7A 146 86.92 c.8.5.1 30772 1ly8A 343 87.26 a.93.1.1 74340 1lycA 343 88.82 a.93.1.1 74344 1xd3A 230 89.36 d.3.1.6 115145