# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 4.12e-21 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 5.30e-21 2pbxA 203 5.78e-21 2uxuA 210 7.70e-21 1t56A 216 1.57e-20 a.4.1.9,a.121.1.1 106428,106429 2hyjA 200 1.58e-20 3ccyA 203 1.85e-20 1rktA 205 2.16e-20 a.4.1.9,a.121.1.1 97623,97624 2qtqA 213 2.19e-20 2g7sA 194 2.96e-20 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 3.49e-20 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 3.76e-20 a.4.1.9,a.121.1.1 67247,67248 3bhqA 211 5.28e-20 2f07A 197 6.68e-20 2fq4A 192 6.81e-20 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 7.45e-20 2genA 197 9.66e-20 a.4.1.9,a.121.1.1 135062,135063 3cdlA 203 9.70e-20 1ui5A 215 9.92e-20 a.4.1.9,a.121.1.1 107856,107857 1zkgA 212 1.05e-19 a.4.1.9,a.121.1.1 125194,125195 3c2bA 221 1.06e-19 1pb6A 212 1.14e-19 a.4.1.9,a.121.1.1 88017,88018 2rasA 212 1.14e-19 2id6A 202 1.34e-19 1z77A 200 1.49e-19 a.4.1.9,a.121.1.1 124588,124589 3crjA 199 1.50e-19 2iekA 200 1.52e-19 3bcgA 215 1.63e-19 3cwrA 208 1.85e-19 2raeA 207 1.89e-19 2zb9A 214 3.38e-19 2nx4A 194 4.40e-19 2qcoA 210 5.35e-19 2hytA 197 5.88e-19 2dg7A 195 7.00e-19 2o7tA 199 7.56e-19 2gfnA 209 7.87e-19 a.4.1.9,a.121.1.1 135101,135102 2iaiA 230 8.73e-19 2zcmA 192 9.42e-19 2jj7A 186 1.31e-18 2qibA 231 1.39e-18 3b81A 203 2.11e-18 2qkoA 215 2.54e-18 2id3A 225 3.30e-18 a.4.1.9,a.121.1.1 137261,137262 2tct 207 3.77e-18 2g3bA 208 4.04e-18 a.4.1.9,a.121.1.1 134558,134559 1sgmA 191 5.40e-18 a.4.1.9,a.121.1.1 105537,105538 2i10A 202 5.50e-18 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 5.66e-18 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 6.54e-18 a.4.1.9,a.121.1.1 131313,131314 3cjdA 198 6.73e-18 2optA 234 7.67e-18 2o7oA 207 8.20e-18 a.4.1.9,a.121.1.1 138930,138931 2fbqA 235 1.21e-17 a.4.1.9,a.121.1.1 133256,133257 2rekA 199 1.44e-17 3bqyA 209 1.45e-17 2fx0A 201 1.58e-17 a.4.1.9,a.121.1.1 134269,134270 2np5A 203 1.62e-17 a.4.1.9,a.121.1.1 138424,138425 3colA 196 1.96e-17 3bniA 229 2.07e-17 2hkuA 215 2.41e-17 2of7A 260 2.78e-17 2g7gA 213 3.58e-17 a.4.1.9,a.121.1.1 134732,134733 2q24A 194 3.64e-17 3bjbA 207 3.94e-17 2iu5A 195 5.34e-17 2oerA 214 5.57e-17 2fd5A 180 7.01e-17 a.4.1.9,a.121.1.1 133291,133292 1a6i 217 7.26e-17 2oi8A 216 1.11e-16 1z0xA 220 1.41e-16 a.4.1.9,a.121.1.1 124334,124335 2vprA 207 1.92e-16 2yveA 185 2.07e-16 2guhA 214 2.38e-16 2dg8A 193 2.76e-16 2eh3A 179 4.15e-16 2qwtA 196 5.73e-16 2hxoA 237 5.86e-16 1v7bA 185 7.94e-16 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 3.27e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 2.55e-14 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.4059 1hlvA 131 0.4320 a.4.1.7,a.4.1.7 65854,65855 2dt5A 211 0.8919 a.4.5.38,c.2.1.12 131708,131709 2rn7A 108 2.358 2ev0A 142 2.655 a.4.5.24,a.76.1.1 132413,132414 2v9vA 135 3.695 2qq9A 226 4.311 1xcbA 211 5.388 a.4.5.38,c.2.1.12 109552,109553 2pg4A 95 5.502 1xsvA 113 5.820 a.4.13.3 116003 1bl0A 129 6.420 a.4.1.8,a.4.1.8 16053,16054 3co4A 312 6.596 1wsuA 124 7.260 a.4.5.35,a.4.5.35 121245,121246 1zcaA 359 11.61 a.66.1.1,c.37.1.8 124897,124898 1a0pA 290 11.90 a.60.9.1,d.163.1.1 18105,42165 1z5hA 780 12.18 2ahrA 259 13.08 a.100.1.10,c.2.1.6 126775,126776 1tu7A 208 14.22 a.45.1.1,c.47.1.5 112653,112654 1a0p 290 14.83 1l3lA 234 15.26 a.4.6.2,d.110.5.1 73541,73542 1fseA 74 16.43 a.4.6.2 60000 2fnaA 357 16.79 a.4.5.11,c.37.1.20 133809,133810 1zljA 78 17.48 2ftsA 419 17.57 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2gsqA 202 18.91 a.45.1.1,c.47.1.5 17715,33009 1oywA 523 19.12 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1x9fB 145 19.20 a.1.1.2 114984 1nhyA 219 19.48 a.45.1.1,c.47.1.5 80520,80521 2v1xA 591 19.80 2zfoC 147 20.17 1ijbA 202 20.83 c.62.1.1 71229 1b0nA 111 20.97 a.34.1.1,a.35.1.3 17001,17064 1y7yA 74 21.34 a.35.1.3 122729 1resA 43 22.04 a.4.1.2 16023 1je8A 82 22.66 a.4.6.2 77108 1sfxA 109 23.27 a.4.5.50 105505 2de3A 365 24.19 2nszA 129 24.55 a.118.1.14 138560 1z91A 147 24.86 a.4.5.28 124736 1y9qA 192 25.04 a.35.1.8,b.82.1.15 116592,116593 1xo0A 324 26.03 a.60.9.1,d.163.1.1 115674,115675 2ictA 94 28.64 2dtrA 226 28.87 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2bnmA 198 30.78 a.35.1.3,b.82.1.10 128835,128836 1rzsA 61 32.96 a.35.1.2 105139 2dh2A 424 33.79 2izzA 322 34.71 1x9fA 151 36.50 a.1.1.2 114983 1oe8A 211 36.66 a.45.1.1,c.47.1.5 86905,86906 1wa5B 530 37.06 a.118.1.1 114432 3b7hA 78 37.20 2rcyA 262 37.44 1yqgA 263 38.45 1utxA 66 38.94 a.35.1.3 108034 1lrvA 244 40.51 a.118.1.5 19146 1lrv 244 41.02 1jkoC 52 41.44 a.4.1.2 66809 3bddA 142 42.38 1p2xA 159 42.54 a.40.1.1 104062 2graA 277 43.05 2pbyA 308 43.88 1fx7A 230 45.00 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1px5A 349 45.31 a.160.1.2,d.218.1.6 95277,95278 1js3A 486 45.55 c.67.1.6 67215 2imsA 171 47.68 2ebyA 113 48.46 1zy9A 564 50.23 b.30.5.11,c.1.8.13 125813,125814 1b3uA 588 51.45 a.118.1.2 19135 2b5aA 77 51.50 a.35.1.3 127882 1u8bA 133 51.60 1yuzA 202 52.50 a.25.1.1,g.41.5.1 124077,124078 1a5tA 334 52.62 a.80.1.1,c.37.1.20 18450,32423 2j07A 420 53.79 a.99.1.1,c.28.1.1 137891,137892 1mkmA 249 54.31 a.4.5.33,d.110.2.2 79242,79243 1g7oA 215 57.22 a.45.1.1,c.47.1.5 60332,60333 1kgnA 329 57.33 a.25.1.2 68584 1vflA 356 57.74 c.1.9.1 120041 2zfoA 140 58.54 2cx5A 158 59.33 2a2rA 210 60.15 a.45.1.1,c.47.1.5 126058,126059 1s3jA 155 60.64 a.4.5.28 98437 1lbkA 208 60.99 a.45.1.1,c.47.1.5 73809,73810 2ifuA 307 61.37 1adrA 76 61.68 a.35.1.2 17042 2o8xA 70 62.34 2rfpA 171 64.55 1on2A 142 67.63 a.4.5.24,a.76.1.1 87103,87104 2nvoA 535 69.06 2qwwA 154 69.21 1k3yA 221 69.58 a.45.1.1,c.47.1.5 77245,77246 1f1eA 154 69.65 a.22.1.2 64927 2dnxA 130 69.74 2ondA 308 71.34 1xqsA 280 71.90 a.118.1.21 122243 17gsA 210 71.93 a.45.1.1,c.47.1.5 17524,32818 2z0xA 158 72.39 1sedA 117 73.26 a.219.1.1 105449 1k1xA 659 73.28 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2nyxA 168 73.36 2o3fA 111 74.25 3bs3A 76 75.05 1jlvA 209 75.12 a.45.1.1,c.47.1.5 71729,71730 1v2aA 210 75.38 a.45.1.1,c.47.1.5 100263,100264 2vg3A 284 76.09 3b8dA 363 76.46 2gdrA 202 77.46 1a0cA 438 78.46 c.1.15.3 29529 2cro 71 79.18 2o09A 189 79.28 2ofyA 86 79.47 1bw0A 416 79.68 c.67.1.1 34385 1r69 69 81.18 2pvqA 201 81.36 3ciwA 348 81.59 2hnlA 225 82.91 2d4zA 250 83.02 d.37.1.1,d.37.1.1 131260,131261 1ouvA 273 83.07 a.118.18.1 93570 1r69A 69 83.44 a.35.1.2 17028 1gqnA 252 83.87 c.1.10.1 90514 2nt0A 497 84.38 b.71.1.2,c.1.8.3 138561,138562 2r8wA 332 84.98 1n2aA 201 85.63 a.45.1.1,c.47.1.5 91553,91554 1z9hA 290 85.85 a.45.1.1,c.47.1.5 124758,124759 2ii2A 310 87.79 2bv6A 142 88.24 1tadA 324 88.28 a.66.1.1,c.37.1.8 18194,32077 2g7uA 257 88.49 2ia2A 265 88.86