# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 2.97e-22 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 3.65e-22 2uxuA 210 3.93e-22 2ibdA 204 4.29e-22 2hyjA 200 8.22e-22 1t56A 216 8.32e-22 a.4.1.9,a.121.1.1 106428,106429 3ccyA 203 1.36e-21 2g7sA 194 1.40e-21 a.4.1.9,a.121.1.1 134737,134738 1rktA 205 1.48e-21 a.4.1.9,a.121.1.1 97623,97624 2qtqA 213 2.19e-21 1qvtA 194 2.88e-21 a.4.1.9,a.121.1.1 104602,104603 3bhqA 211 3.14e-21 1jt6A 188 3.25e-21 a.4.1.9,a.121.1.1 67247,67248 3cdlA 203 4.06e-21 1pb6A 212 5.71e-21 a.4.1.9,a.121.1.1 88017,88018 3c2bA 221 6.17e-21 2f07A 197 6.45e-21 2genA 197 7.03e-21 a.4.1.9,a.121.1.1 135062,135063 1zkgA 212 7.06e-21 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 7.32e-21 1z77A 200 7.67e-21 a.4.1.9,a.121.1.1 124588,124589 2fq4A 192 7.69e-21 a.4.1.9,a.121.1.1 133937,133938 3bcgA 215 8.10e-21 1ui5A 215 8.72e-21 a.4.1.9,a.121.1.1 107856,107857 2id6A 202 9.33e-21 2rasA 212 9.90e-21 3crjA 199 1.07e-20 3cjdA 198 1.31e-20 2iekA 200 1.37e-20 3cwrA 208 1.98e-20 2qcoA 210 2.14e-20 2nx4A 194 2.66e-20 2raeA 207 3.22e-20 2zb9A 214 4.00e-20 2hytA 197 5.40e-20 2o7tA 199 6.21e-20 2dg7A 195 6.24e-20 2zcmA 192 6.44e-20 2gfnA 209 6.57e-20 a.4.1.9,a.121.1.1 135101,135102 2iaiA 230 7.67e-20 2qkoA 215 1.12e-19 2jj7A 186 1.44e-19 2qibA 231 2.23e-19 3b81A 203 2.60e-19 2tct 207 2.66e-19 2id3A 225 2.94e-19 a.4.1.9,a.121.1.1 137261,137262 1sgmA 191 3.07e-19 a.4.1.9,a.121.1.1 105537,105538 1zk8A 183 5.35e-19 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 6.13e-19 a.4.1.9,a.121.1.1 136960,136961 2optA 234 6.52e-19 2g3bA 208 7.68e-19 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 7.72e-19 a.4.1.9,a.121.1.1 131313,131314 2o7oA 207 1.01e-18 a.4.1.9,a.121.1.1 138930,138931 2fbqA 235 1.05e-18 a.4.1.9,a.121.1.1 133256,133257 2rekA 199 1.62e-18 2np5A 203 1.67e-18 a.4.1.9,a.121.1.1 138424,138425 3bjbA 207 1.74e-18 3colA 196 2.00e-18 2fx0A 201 2.01e-18 a.4.1.9,a.121.1.1 134269,134270 2of7A 260 2.08e-18 3bqyA 209 2.25e-18 3bniA 229 2.94e-18 2hkuA 215 3.67e-18 2g7gA 213 4.06e-18 a.4.1.9,a.121.1.1 134732,134733 2q24A 194 4.76e-18 2oerA 214 4.97e-18 2iu5A 195 6.63e-18 2fd5A 180 6.78e-18 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 6.80e-18 1a6i 217 7.55e-18 2vprA 207 1.46e-17 1z0xA 220 2.30e-17 a.4.1.9,a.121.1.1 124334,124335 2guhA 214 2.82e-17 2dg8A 193 2.84e-17 2yveA 185 3.49e-17 2hxoA 237 4.42e-17 2eh3A 179 4.81e-17 2qwtA 196 5.90e-17 1v7bA 185 1.32e-16 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 4.76e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 3.22e-15 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.5042 2rn7A 108 1.268 1hlvA 131 1.342 a.4.1.7,a.4.1.7 65854,65855 2dt5A 211 1.695 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 2.352 a.4.5.24,a.76.1.1 132413,132414 2qq9A 226 3.014 1bl0A 129 3.192 a.4.1.8,a.4.1.8 16053,16054 2gsqA 202 3.276 a.45.1.1,c.47.1.5 17715,33009 2v9vA 135 4.534 1nhyA 219 4.827 a.45.1.1,c.47.1.5 80520,80521 1wsuA 124 5.572 a.4.5.35,a.4.5.35 121245,121246 1xsvA 113 6.562 a.4.13.3 116003 1xcbA 211 8.248 a.4.5.38,c.2.1.12 109552,109553 2pg4A 95 9.176 2zfoC 147 9.262 1tu7A 208 10.09 a.45.1.1,c.47.1.5 112653,112654 1z5hA 780 10.33 3co4A 312 12.33 2fnaA 357 14.94 a.4.5.11,c.37.1.20 133809,133810 1x9fB 145 15.39 a.1.1.2 114984 1oywA 523 15.83 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1xo0A 324 18.62 a.60.9.1,d.163.1.1 115674,115675 1oe8A 211 19.89 a.45.1.1,c.47.1.5 86905,86906 1l3lA 234 21.05 a.4.6.2,d.110.5.1 73541,73542 2graA 277 22.87 1sfxA 109 23.24 a.4.5.50 105505 1ijbA 202 25.40 c.62.1.1 71229 1resA 43 26.42 a.4.1.2 16023 1zljA 78 26.79 1p2xA 159 27.33 a.40.1.1 104062 2ahrA 259 27.48 a.100.1.10,c.2.1.6 126775,126776 2vg3A 284 27.54 1je8A 82 29.04 a.4.6.2 77108 2j07A 420 30.57 a.99.1.1,c.28.1.1 137891,137892 1xqsA 280 31.33 a.118.1.21 122243 1px5A 349 31.36 a.160.1.2,d.218.1.6 95277,95278 1fseA 74 32.86 a.4.6.2 60000 1a0pA 290 33.20 a.60.9.1,d.163.1.1 18105,42165 1wa5B 530 34.30 a.118.1.1 114432 1y7yA 74 34.97 a.35.1.3 122729 2v1xA 591 35.90 1m48A 133 37.08 a.26.1.2 74443 2bnmA 198 37.37 a.35.1.3,b.82.1.10 128835,128836 1b0nA 111 39.27 a.34.1.1,a.35.1.3 17001,17064 1on2A 142 39.42 a.4.5.24,a.76.1.1 87103,87104 2de3A 365 40.46 1y9qA 192 41.04 a.35.1.8,b.82.1.15 116592,116593 1zcaA 359 41.43 a.66.1.1,c.37.1.8 124897,124898 2ftsA 419 41.52 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1x9fA 151 42.94 a.1.1.2 114983 1b6g 310 43.13 2a2rA 210 44.44 a.45.1.1,c.47.1.5 126058,126059 1lbkA 208 46.31 a.45.1.1,c.47.1.5 73809,73810 3cucA 291 48.61 1m0uA 249 48.64 a.45.1.1,c.47.1.5 78359,78360 1jkoC 52 50.30 a.4.1.2 66809 1pgtA 210 50.33 a.45.1.1,c.47.1.5 17515,32809 2zfoA 140 51.38 2d2mC 147 51.71 1rzsA 61 51.86 a.35.1.2 105139 2d4zA 250 53.97 d.37.1.1,d.37.1.1 131260,131261 1lrv 244 54.39 2dtrA 226 55.16 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1bw0A 416 56.19 c.67.1.1 34385 2nszA 129 56.95 a.118.1.14 138560 1yuzA 202 57.20 a.25.1.1,g.41.5.1 124077,124078 2dh2A 424 57.62 2gdrA 202 57.67 1a0p 290 58.38 2pvqA 201 58.51 1ouvA 273 59.22 a.118.18.1 93570 1v2aA 210 59.66 a.45.1.1,c.47.1.5 100263,100264 1z9hA 290 60.15 a.45.1.1,c.47.1.5 124758,124759 3cgvA 397 60.39 1sedA 117 60.59 a.219.1.1 105449 1fx7A 230 61.82 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2ifuA 307 62.66 2rfpA 171 63.05 1f1eA 154 64.31 a.22.1.2 64927 3cloA 258 65.59 1n2aA 201 66.31 a.45.1.1,c.47.1.5 91553,91554 1lrvA 244 67.27 a.118.1.5 19146 2nt0A 497 67.73 b.71.1.2,c.1.8.3 138561,138562 1xszA 356 71.35 a.118.3.1,d.129.9.1 116005,116006 1dlyA 164 71.87 a.1.1.1 14983 1kgnA 329 72.30 a.25.1.2 68584 2dfwA 396 72.84 1owcA 427 73.58 a.103.1.1 104039 1lucA 355 75.09 c.1.16.1 29547 1dd9A 338 76.50 e.13.1.1 43254 3b8dA 363 76.83 2ictA 94 77.57 3ciwA 348 77.91 2nrlA 147 78.15 1a0fA 201 78.23 a.45.1.1,c.47.1.5 17737,33031 2rcyA 262 79.12 3b7hA 78 79.33 1yhuB 144 79.85 1a0cA 438 80.16 c.1.15.3 29529 2izzA 322 80.31 1s69A 124 81.08 a.1.1.1 105305 2r8wA 332 82.08 2o09A 189 82.31 2ihdA 155 82.69 1zy9A 564 83.31 b.30.5.11,c.1.8.13 125813,125814 1u8bA 133 85.18 2ntoA 201 87.07 1utxA 66 87.27 a.35.1.3 108034 1oktA 211 88.00 a.45.1.1,c.47.1.5 93272,93273 2cj4A 150 88.66 a.29.6.1 130518 3bqpA 80 88.96 1mkmA 249 89.63 a.4.5.33,d.110.2.2 79242,79243