# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 3.93e-21 1vi0A 206 5.05e-21 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 7.79e-21 2uxuA 210 9.99e-21 2hyjA 200 1.40e-20 2qtqA 213 1.73e-20 1t56A 216 2.20e-20 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 2.33e-20 a.4.1.9,a.121.1.1 134737,134738 3cdlA 203 2.95e-20 3bruA 222 3.62e-20 2genA 197 3.68e-20 a.4.1.9,a.121.1.1 135062,135063 3ccyA 203 3.87e-20 1rktA 205 4.28e-20 a.4.1.9,a.121.1.1 97623,97624 2f07A 197 4.31e-20 1jt6A 188 4.82e-20 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 5.58e-20 a.4.1.9,a.121.1.1 88017,88018 3bhqA 211 6.32e-20 2rasA 212 6.58e-20 3c2bA 221 6.77e-20 1qvtA 194 7.51e-20 a.4.1.9,a.121.1.1 104602,104603 2fq4A 192 8.67e-20 a.4.1.9,a.121.1.1 133937,133938 3bcgA 215 8.68e-20 1ui5A 215 9.65e-20 a.4.1.9,a.121.1.1 107856,107857 1z77A 200 1.31e-19 a.4.1.9,a.121.1.1 124588,124589 1zkgA 212 1.50e-19 a.4.1.9,a.121.1.1 125194,125195 2gfnA 209 1.53e-19 a.4.1.9,a.121.1.1 135101,135102 3crjA 199 2.15e-19 2zb9A 214 2.17e-19 2id6A 202 2.28e-19 2raeA 207 2.28e-19 2nx4A 194 2.70e-19 2iekA 200 2.91e-19 3cwrA 208 2.97e-19 3cjdA 198 3.33e-19 2qcoA 210 4.38e-19 2iaiA 230 6.90e-19 2zcmA 192 7.47e-19 2dg7A 195 9.01e-19 2id3A 225 9.17e-19 a.4.1.9,a.121.1.1 137261,137262 2hytA 197 9.87e-19 2jj7A 186 1.22e-18 2i10A 202 1.30e-18 a.4.1.9,a.121.1.1 136960,136961 2o7tA 199 1.51e-18 2qkoA 215 2.91e-18 2qibA 231 3.29e-18 2d6yA 202 3.50e-18 a.4.1.9,a.121.1.1 131313,131314 3b81A 203 3.74e-18 2tct 207 4.47e-18 1sgmA 191 5.37e-18 a.4.1.9,a.121.1.1 105537,105538 2g3bA 208 6.52e-18 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 9.87e-18 a.4.1.9,a.121.1.1 138930,138931 1zk8A 183 1.36e-17 a.4.1.9,a.121.1.1 125177,125178 2fx0A 201 1.72e-17 a.4.1.9,a.121.1.1 134269,134270 3bqyA 209 1.86e-17 2fbqA 235 1.99e-17 a.4.1.9,a.121.1.1 133256,133257 2optA 234 2.13e-17 2rekA 199 2.18e-17 2np5A 203 2.85e-17 a.4.1.9,a.121.1.1 138424,138425 3colA 196 2.87e-17 2hkuA 215 3.04e-17 3bjbA 207 3.18e-17 2g7gA 213 3.47e-17 a.4.1.9,a.121.1.1 134732,134733 2q24A 194 4.14e-17 2of7A 260 4.26e-17 3bniA 229 4.98e-17 2fd5A 180 7.26e-17 a.4.1.9,a.121.1.1 133291,133292 2vprA 207 7.62e-17 1a6i 217 7.73e-17 2iu5A 195 8.46e-17 2oerA 214 1.18e-16 2oi8A 216 1.71e-16 1z0xA 220 1.90e-16 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 2.79e-16 2qwtA 196 3.51e-16 2guhA 214 4.55e-16 2hxoA 237 5.96e-16 1v7bA 185 9.88e-16 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 9.98e-16 2eh3A 179 1.49e-15 1t33A 224 4.10e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 3.83e-14 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.3576 2dt5A 211 0.4979 a.4.5.38,c.2.1.12 131708,131709 1hlvA 131 0.6286 a.4.1.7,a.4.1.7 65854,65855 1wsuA 124 1.225 a.4.5.35,a.4.5.35 121245,121246 2rn7A 108 1.498 1xcbA 211 1.640 a.4.5.38,c.2.1.12 109552,109553 2ev0A 142 1.696 a.4.5.24,a.76.1.1 132413,132414 2pg4A 95 2.416 2v9vA 135 3.884 2qq9A 226 4.164 1on2A 142 4.905 a.4.5.24,a.76.1.1 87103,87104 1xsvA 113 5.352 a.4.13.3 116003 1sfxA 109 6.611 a.4.5.50 105505 2bnmA 198 6.619 a.35.1.3,b.82.1.10 128835,128836 2h09A 155 6.729 1zljA 78 6.996 1ijbA 202 7.343 c.62.1.1 71229 1je8A 82 8.636 a.4.6.2 77108 1y9qA 192 8.701 a.35.1.8,b.82.1.15 116592,116593 2ahrA 259 8.978 a.100.1.10,c.2.1.6 126775,126776 1fseA 74 9.074 a.4.6.2 60000 1bl0A 129 9.435 a.4.1.8,a.4.1.8 16053,16054 1l3lA 234 9.473 a.4.6.2,d.110.5.1 73541,73542 1y7yA 74 9.517 a.35.1.3 122729 1b0nA 111 9.727 a.34.1.1,a.35.1.3 17001,17064 2o3fA 111 10.66 1jkoC 52 12.50 a.4.1.2 66809 1x9fB 145 12.57 a.1.1.2 114984 2graA 277 13.95 2fnaA 357 14.01 a.4.5.11,c.37.1.20 133809,133810 3b7hA 78 14.38 2qwwA 154 14.39 1oe8A 211 14.84 a.45.1.1,c.47.1.5 86905,86906 1lmb3 92 15.29 1utxA 66 15.72 a.35.1.3 108034 1u8bA 133 15.92 2dtrA 226 16.21 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1adrA 76 17.99 a.35.1.2 17042 2r1jL 68 19.18 2cro 71 19.97 3bddA 142 20.44 2gsqA 202 20.57 a.45.1.1,c.47.1.5 17715,33009 1a0pA 290 20.84 a.60.9.1,d.163.1.1 18105,42165 2ictA 94 21.01 1ic8A 194 21.24 a.4.1.1,a.35.1.1 76740,76741 2ifuA 307 21.30 2ebyA 113 21.32 2nszA 129 21.86 a.118.1.14 138560 2b5aA 77 22.68 a.35.1.3 127882 2zfoC 147 23.15 1rzsA 61 23.33 a.35.1.2 105139 1z91A 147 24.18 a.4.5.28 124736 1r69 69 25.13 1r69A 69 25.47 a.35.1.2 17028 2q0zX 339 25.74 1yqgA 263 25.90 3cloA 258 27.55 1resA 43 27.81 a.4.1.2 16023 2izzA 322 28.29 2ftsA 419 28.54 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2croA 71 29.00 a.35.1.2 17038 1nhyA 219 29.39 a.45.1.1,c.47.1.5 80520,80521 1jgsA 138 30.45 a.4.5.28 66683 1sxjC 340 31.57 a.80.1.1,c.37.1.20 106085,106086 1zcaA 359 32.02 a.66.1.1,c.37.1.8 124897,124898 3co4A 312 32.20 1lvaA 258 32.57 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2nrlA 147 33.60 2fjrA 189 35.18 2nyxA 168 35.43 1fx7A 230 35.45 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 3bs3A 76 35.66 2nnnA 140 36.40 1neqA 74 37.62 a.35.1.2 17063 1a0p 290 38.81 1mkmA 249 39.67 a.4.5.33,d.110.2.2 79242,79243 1xdyA 298 40.71 d.176.1.1 115186 1bw0A 416 40.92 c.67.1.1 34385 2rcyA 262 41.23 2q4uA 272 41.40 2dh2A 424 41.45 2bkwA 385 41.57 c.67.1.3 128714 2ondA 308 41.65 2ofyA 86 42.52 2auwA 170 42.54 a.35.1.10,d.331.1.1 127339,127340 1ypxA 375 43.42 2dnxA 130 44.04 1s3jA 155 44.48 a.4.5.28 98437 2zfoA 140 44.80 3bwgA 239 45.08 1sedA 117 45.08 a.219.1.1 105449 3cecA 104 45.87 1auiB 169 46.07 a.39.1.5 17325 2ia2A 265 46.36 3bj6A 152 47.25 2j07A 420 48.31 a.99.1.1,c.28.1.1 137891,137892 1wdcB 156 49.61 a.39.1.5 17302 2g7uA 257 50.86 2rdpA 150 51.12 2cfxA 144 51.35 a.4.5.32,d.58.4.2 130395,130396 1vz0A 230 52.41 a.4.14.1,d.268.1.1 108929,108930 2de3A 365 52.77 2o0yA 260 52.87 2zfdA 226 53.70 1v2aA 210 54.65 a.45.1.1,c.47.1.5 100263,100264 2ethA 154 55.17 a.4.5.28 132358 1s69A 124 56.23 a.1.1.1 105305 1xo0A 324 56.53 a.60.9.1,d.163.1.1 115674,115675 2gxgA 146 57.70 2pgd 482 58.11 3ciwA 348 58.80 1aisB 200 60.45 a.74.1.2,a.74.1.2 18384,18385 1ji6A 589 60.60 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1omrA 201 60.81 a.39.1.5 93349 2cx5A 158 61.13 1no5A 114 61.20 d.218.1.5 92014 1jftA 340 61.29 a.35.1.5,c.93.1.1 66652,66653 2r8wA 332 63.21 1r8eA 278 66.14 a.6.1.3,d.60.1.1 104843,104844 3bpvA 138 66.20 2ppxA 99 67.69 2o8xA 70 67.86 2f4mB 61 67.93 a.189.1.1 132931 2d2mC 147 68.56 1wa5B 530 71.09 a.118.1.1 114432 2hq2A 354 73.85 e.62.1.1 136656 2pmbA 462 74.26 1wdvA 152 77.08 d.116.1.1 114539 3c57A 95 77.32 1js3A 486 79.24 c.67.1.6 67215 1hw1A 239 81.19 a.4.5.6,a.78.1.1 16111,18441 2blfA 373 83.83 1ub9A 100 84.27 a.4.5.28 99159 2cfmA 561 85.32 2ivmA 150 85.69 2ibpA 409 85.69 1j5yA 187 85.75 a.4.5.1,d.94.2.1 71592,71593 1g7oA 215 85.85 a.45.1.1,c.47.1.5 60332,60333 2vl6A 268 86.17 2scpA 174 86.40 a.39.1.5 17256 2a2rA 210 86.58 a.45.1.1,c.47.1.5 126058,126059 2cj4A 150 87.15 a.29.6.1 130518 2a61A 145 88.75 a.4.5.28 126187 2d1hA 109 89.76 a.4.5.50 131125 2gb3A 409 89.91 c.67.1.1 134903