# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 6.20e-23 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 9.96e-23 2uxuA 210 1.07e-22 2hyjA 200 1.46e-22 2ibdA 204 2.00e-22 1rktA 205 2.70e-22 a.4.1.9,a.121.1.1 97623,97624 3ccyA 203 2.88e-22 1t56A 216 3.82e-22 a.4.1.9,a.121.1.1 106428,106429 1jt6A 188 4.25e-22 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 5.08e-22 a.4.1.9,a.121.1.1 104602,104603 3bhqA 211 6.12e-22 2g7sA 194 7.38e-22 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 8.46e-22 3cdlA 203 8.52e-22 3c2bA 221 1.10e-21 1zkgA 212 1.32e-21 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 1.42e-21 a.4.1.9,a.121.1.1 124588,124589 3bruA 222 1.71e-21 2f07A 197 2.10e-21 2fq4A 192 2.20e-21 a.4.1.9,a.121.1.1 133937,133938 3crjA 199 2.45e-21 2id6A 202 2.60e-21 2qcoA 210 2.91e-21 2iekA 200 3.54e-21 2rasA 212 3.80e-21 1ui5A 215 4.26e-21 a.4.1.9,a.121.1.1 107856,107857 2raeA 207 4.35e-21 1pb6A 212 4.46e-21 a.4.1.9,a.121.1.1 88017,88018 3bcgA 215 5.01e-21 3cwrA 208 5.46e-21 2genA 197 5.64e-21 a.4.1.9,a.121.1.1 135062,135063 2zb9A 214 8.11e-21 2nx4A 194 9.59e-21 2gfnA 209 1.35e-20 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 1.43e-20 2hytA 197 2.47e-20 2dg7A 195 2.63e-20 2qkoA 215 3.16e-20 2zcmA 192 3.90e-20 2id3A 225 4.42e-20 a.4.1.9,a.121.1.1 137261,137262 2jj7A 186 4.55e-20 2iaiA 230 6.14e-20 2qibA 231 6.44e-20 2tct 207 6.66e-20 2g3bA 208 7.35e-20 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 1.12e-19 a.4.1.9,a.121.1.1 131313,131314 3cjdA 198 1.28e-19 1sgmA 191 1.36e-19 a.4.1.9,a.121.1.1 105537,105538 3b81A 203 1.43e-19 2optA 234 1.91e-19 2o7oA 207 2.36e-19 a.4.1.9,a.121.1.1 138930,138931 1zk8A 183 2.96e-19 a.4.1.9,a.121.1.1 125177,125178 2np5A 203 3.71e-19 a.4.1.9,a.121.1.1 138424,138425 2i10A 202 4.60e-19 a.4.1.9,a.121.1.1 136960,136961 2rekA 199 4.77e-19 3bniA 229 5.01e-19 2of7A 260 5.04e-19 3colA 196 6.78e-19 3bjbA 207 7.10e-19 2hkuA 215 7.42e-19 2fx0A 201 7.74e-19 a.4.1.9,a.121.1.1 134269,134270 2g7gA 213 1.13e-18 a.4.1.9,a.121.1.1 134732,134733 3bqyA 209 1.14e-18 2iu5A 195 1.17e-18 2fbqA 235 1.24e-18 a.4.1.9,a.121.1.1 133256,133257 2fd5A 180 1.44e-18 a.4.1.9,a.121.1.1 133291,133292 2q24A 194 2.30e-18 2oi8A 216 2.31e-18 2oerA 214 3.46e-18 1a6i 217 3.64e-18 2vprA 207 8.16e-18 2dg8A 193 9.66e-18 1z0xA 220 1.06e-17 a.4.1.9,a.121.1.1 124334,124335 2yveA 185 1.23e-17 2guhA 214 1.61e-17 2hxoA 237 1.62e-17 2eh3A 179 1.94e-17 1v7bA 185 1.96e-17 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 2.45e-17 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 3.74e-17 2g7lA 243 2.77e-15 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.7120 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.034 2v9vA 135 1.114 2dt5A 211 2.510 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 2.610 a.4.5.24,a.76.1.1 132413,132414 1z5hA 780 3.696 2gsqA 202 4.152 a.45.1.1,c.47.1.5 17715,33009 2qq9A 226 4.336 2fnaA 357 5.234 a.4.5.11,c.37.1.20 133809,133810 1bl0A 129 5.861 a.4.1.8,a.4.1.8 16053,16054 1nhyA 219 8.174 a.45.1.1,c.47.1.5 80520,80521 1x9fB 145 8.383 a.1.1.2 114984 2rn7A 108 9.041 2pg4A 95 9.080 3co4A 312 10.21 1wsuA 124 12.20 a.4.5.35,a.4.5.35 121245,121246 2ondA 308 12.71 2nszA 129 13.18 a.118.1.14 138560 1oywA 523 13.64 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1s69A 124 13.85 a.1.1.1 105305 1xcbA 211 14.05 a.4.5.38,c.2.1.12 109552,109553 1xsvA 113 14.93 a.4.13.3 116003 1a0pA 290 15.35 a.60.9.1,d.163.1.1 18105,42165 2zfoC 147 15.42 2v1xA 591 15.74 2ahrA 259 15.84 a.100.1.10,c.2.1.6 126775,126776 1ee4A 423 19.17 a.118.1.1 19128 1x9fA 151 20.29 a.1.1.2 114983 1tu7A 208 20.37 a.45.1.1,c.47.1.5 112653,112654 2qguA 211 20.37 1v2aA 210 20.59 a.45.1.1,c.47.1.5 100263,100264 1zy9A 564 21.97 b.30.5.11,c.1.8.13 125813,125814 1fseA 74 22.81 a.4.6.2 60000 2ftsA 419 22.89 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1lmb3 92 23.87 2ho1A 252 23.88 1oe8A 211 24.12 a.45.1.1,c.47.1.5 86905,86906 1lbkA 208 24.95 a.45.1.1,c.47.1.5 73809,73810 1u8bA 133 25.76 2a2rA 210 26.44 a.45.1.1,c.47.1.5 126058,126059 1xqsA 280 26.67 a.118.1.21 122243 1zcaA 359 27.28 a.66.1.1,c.37.1.8 124897,124898 2q4uA 272 27.45 1yqgA 263 29.51 1sfxA 109 29.93 a.4.5.50 105505 2ifuA 307 30.36 1yhuB 144 30.89 1l3lA 234 31.83 a.4.6.2,d.110.5.1 73541,73542 1dlyA 164 33.26 a.1.1.1 14983 1zljA 78 33.89 1pq1A 196 33.97 f.1.4.1 94986 1xo0A 324 35.15 a.60.9.1,d.163.1.1 115674,115675 1kgnA 329 35.25 a.25.1.2 68584 1on2A 142 37.85 a.4.5.24,a.76.1.1 87103,87104 1jdhA 529 38.42 a.118.1.1 66549 1y7yA 74 38.58 a.35.1.3 122729 1b0nA 111 39.34 a.34.1.1,a.35.1.3 17001,17064 1a0p 290 39.72 2ictA 94 41.18 1a5tA 334 42.56 a.80.1.1,c.37.1.20 18450,32423 1je8A 82 42.80 a.4.6.2 77108 2dtrA 226 44.13 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2dnxA 130 44.62 1u61A 138 45.66 a.149.1.1 107696 2graA 277 47.58 1wa5B 530 48.19 a.118.1.1 114432 1jlvA 209 49.19 a.45.1.1,c.47.1.5 71729,71730 1ukz 203 50.15 1resA 43 50.44 a.4.1.2 16023 2plc 274 51.21 2ii2A 310 52.42 2de3A 365 52.45 2bnmA 198 53.02 a.35.1.3,b.82.1.10 128835,128836 2q0zX 339 53.20 2pbyA 308 53.71 2ihdA 155 53.77 1utxA 66 54.46 a.35.1.3 108034 2pvuA 272 55.66 1b6g 310 56.05 1fx7A 230 56.58 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1mkmA 249 57.27 a.4.5.33,d.110.2.2 79242,79243 1y9qA 192 57.81 a.35.1.8,b.82.1.15 116592,116593 2izzA 322 58.63 2pzzA 147 58.67 2dh2A 424 58.84 2bv6A 142 59.43 2ieeA 271 60.57 2c1mA 424 61.40 2cx5A 158 61.77 2ibpA 409 63.37 1px5A 349 64.28 a.160.1.2,d.218.1.6 95277,95278 1kz7A 353 64.63 a.87.1.1,b.55.1.1 73333,73334 2nrlA 147 65.90 2bk9A 153 65.90 1z91A 147 66.02 a.4.5.28 124736 1auiB 169 66.04 a.39.1.5 17325 1k3yA 221 66.59 a.45.1.1,c.47.1.5 77245,77246 2o3fA 111 66.96 1f1eA 154 67.00 a.22.1.2 64927 2btzA 394 67.70 1m0uA 249 69.22 a.45.1.1,c.47.1.5 78359,78360 1pgtA 210 70.10 a.45.1.1,c.47.1.5 17515,32809 2vq2A 225 70.76 1ne7A 289 71.12 c.124.1.1 91833 3ciwA 348 71.13 1qbkB 890 71.82 a.118.1.1 19127 2o1mA 258 73.81 1ouvA 273 74.46 a.118.18.1 93570 2a2mA 258 76.50 a.132.1.3 126039 1rzsA 61 77.56 a.35.1.2 105139 2z0xA 158 77.91 1b3uA 588 77.97 a.118.1.2 19135 1ho8A 480 78.09 a.118.1.9 61107 1wd6A 123 80.19 d.58.4.12 114525 2vl6A 268 81.57 2zfoA 140 82.03 1y89A 238 83.01 1wdcB 156 85.31 a.39.1.5 17302 1p2xA 159 85.61 a.40.1.1 104062 1wdvA 152 85.79 d.116.1.1 114539 1aj2A 282 85.87 c.1.21.1 29665 2nvoA 535 87.98 1ji6A 589 88.08 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1gqnA 252 88.38 c.1.10.1 90514 3b8dA 363 88.81