# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 2.54e-23 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 2.99e-23 2pbxA 203 3.02e-23 2hyjA 200 4.56e-23 2ibdA 204 7.72e-23 3ccyA 203 9.07e-23 1rktA 205 9.55e-23 a.4.1.9,a.121.1.1 97623,97624 1t56A 216 9.67e-23 a.4.1.9,a.121.1.1 106428,106429 3bhqA 211 1.78e-22 1jt6A 188 2.24e-22 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 2.34e-22 a.4.1.9,a.121.1.1 104602,104603 2qtqA 213 2.47e-22 2g7sA 194 2.48e-22 a.4.1.9,a.121.1.1 134737,134738 3c2bA 221 3.66e-22 3cdlA 203 4.07e-22 1zkgA 212 4.87e-22 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 4.89e-22 1z77A 200 5.02e-22 a.4.1.9,a.121.1.1 124588,124589 2f07A 197 5.08e-22 2fq4A 192 6.35e-22 a.4.1.9,a.121.1.1 133937,133938 3crjA 199 9.00e-22 2id6A 202 9.36e-22 3bcgA 215 1.06e-21 1pb6A 212 1.20e-21 a.4.1.9,a.121.1.1 88017,88018 2iekA 200 1.22e-21 2qcoA 210 1.23e-21 1ui5A 215 1.30e-21 a.4.1.9,a.121.1.1 107856,107857 2genA 197 1.31e-21 a.4.1.9,a.121.1.1 135062,135063 3cwrA 208 1.46e-21 2rasA 212 1.58e-21 2raeA 207 1.62e-21 2zb9A 214 3.55e-21 2nx4A 194 4.43e-21 2gfnA 209 5.18e-21 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 6.18e-21 2dg7A 195 8.29e-21 2qkoA 215 8.87e-21 2hytA 197 9.41e-21 2zcmA 192 1.50e-20 2id3A 225 1.63e-20 a.4.1.9,a.121.1.1 137261,137262 2jj7A 186 1.80e-20 2qibA 231 2.05e-20 2tct 207 2.33e-20 2iaiA 230 2.35e-20 2g3bA 208 2.39e-20 a.4.1.9,a.121.1.1 134558,134559 1sgmA 191 4.26e-20 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 4.58e-20 a.4.1.9,a.121.1.1 131313,131314 3cjdA 198 4.93e-20 2optA 234 5.37e-20 3b81A 203 7.54e-20 2o7oA 207 7.82e-20 a.4.1.9,a.121.1.1 138930,138931 1zk8A 183 1.08e-19 a.4.1.9,a.121.1.1 125177,125178 2np5A 203 1.39e-19 a.4.1.9,a.121.1.1 138424,138425 2i10A 202 1.57e-19 a.4.1.9,a.121.1.1 136960,136961 3bniA 229 1.98e-19 2of7A 260 2.06e-19 3colA 196 2.33e-19 2hkuA 215 2.89e-19 3bjbA 207 3.05e-19 2iu5A 195 3.06e-19 2rekA 199 3.06e-19 2fx0A 201 3.26e-19 a.4.1.9,a.121.1.1 134269,134270 3bqyA 209 3.46e-19 2g7gA 213 4.46e-19 a.4.1.9,a.121.1.1 134732,134733 2fd5A 180 4.78e-19 a.4.1.9,a.121.1.1 133291,133292 2fbqA 235 5.16e-19 a.4.1.9,a.121.1.1 133256,133257 1a6i 217 9.79e-19 2q24A 194 1.05e-18 2oi8A 216 1.28e-18 2oerA 214 1.45e-18 2vprA 207 2.09e-18 1z0xA 220 3.33e-18 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 3.48e-18 2yveA 185 4.89e-18 2hxoA 237 5.11e-18 2guhA 214 7.93e-18 2eh3A 179 9.15e-18 1v7bA 185 9.33e-18 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 1.78e-17 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 1.84e-17 2g7lA 243 1.33e-15 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.6660 1hlvA 131 0.6912 a.4.1.7,a.4.1.7 65854,65855 2v9vA 135 1.240 2ev0A 142 1.301 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.757 a.4.5.38,c.2.1.12 131708,131709 2qq9A 226 2.874 1z5hA 780 4.505 2fnaA 357 4.833 a.4.5.11,c.37.1.20 133809,133810 1bl0A 129 5.233 a.4.1.8,a.4.1.8 16053,16054 2rn7A 108 5.307 1nhyA 219 6.242 a.45.1.1,c.47.1.5 80520,80521 2gsqA 202 6.348 a.45.1.1,c.47.1.5 17715,33009 2pg4A 95 7.626 1xsvA 113 8.677 a.4.13.3 116003 1wsuA 124 9.142 a.4.5.35,a.4.5.35 121245,121246 2ondA 308 11.13 1xcbA 211 11.30 a.4.5.38,c.2.1.12 109552,109553 1zy9A 564 12.27 b.30.5.11,c.1.8.13 125813,125814 2ahrA 259 12.83 a.100.1.10,c.2.1.6 126775,126776 3co4A 312 14.07 2qguA 211 15.24 1s69A 124 15.30 a.1.1.1 105305 2ftsA 419 15.39 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1x9fB 145 16.19 a.1.1.2 114984 1oywA 523 16.34 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1fseA 74 17.15 a.4.6.2 60000 2nszA 129 17.63 a.118.1.14 138560 1a0pA 290 17.81 a.60.9.1,d.163.1.1 18105,42165 1lmb3 92 21.02 1sfxA 109 21.66 a.4.5.50 105505 1tu7A 208 21.66 a.45.1.1,c.47.1.5 112653,112654 2v1xA 591 21.66 1u8bA 133 21.68 1ee4A 423 21.93 a.118.1.1 19128 1zcaA 359 21.99 a.66.1.1,c.37.1.8 124897,124898 1yqgA 263 22.12 1v2aA 210 22.47 a.45.1.1,c.47.1.5 100263,100264 1l3lA 234 22.49 a.4.6.2,d.110.5.1 73541,73542 2zfoC 147 24.90 1b0nA 111 25.60 a.34.1.1,a.35.1.3 17001,17064 1zljA 78 25.73 2dnxA 130 26.25 1on2A 142 26.40 a.4.5.24,a.76.1.1 87103,87104 2ho1A 252 27.14 2ictA 94 27.98 1pq1A 196 28.48 f.1.4.1 94986 1oe8A 211 29.03 a.45.1.1,c.47.1.5 86905,86906 1je8A 82 29.50 a.4.6.2 77108 1dlyA 164 29.55 a.1.1.1 14983 1yhuB 144 30.51 1xo0A 324 30.53 a.60.9.1,d.163.1.1 115674,115675 2a2rA 210 31.96 a.45.1.1,c.47.1.5 126058,126059 1lbkA 208 32.00 a.45.1.1,c.47.1.5 73809,73810 2dtrA 226 32.48 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1kgnA 329 35.88 a.25.1.2 68584 1jlvA 209 36.09 a.45.1.1,c.47.1.5 71729,71730 1a5tA 334 38.52 a.80.1.1,c.37.1.20 18450,32423 1y7yA 74 39.22 a.35.1.3 122729 2plc 274 39.42 1xqsA 280 39.96 a.118.1.21 122243 1jdhA 529 40.23 a.118.1.1 66549 2q4uA 272 41.78 1resA 43 42.96 a.4.1.2 16023 1b6g 310 43.70 1utxA 66 43.75 a.35.1.3 108034 2ieeA 271 45.01 2ihdA 155 46.24 1x9fA 151 46.30 a.1.1.2 114983 2pvuA 272 46.60 1z91A 147 46.86 a.4.5.28 124736 2o8xA 70 47.98 1f1eA 154 48.10 a.22.1.2 64927 1a0p 290 49.08 2nrlA 147 49.62 2dh2A 424 50.68 1fx7A 230 51.25 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2ii2A 310 52.20 1ukz 203 52.47 1rzsA 61 52.55 a.35.1.2 105139 2cx5A 158 53.38 3ciwA 348 53.40 1mkmA 249 53.55 a.4.5.33,d.110.2.2 79242,79243 2nvoA 535 53.82 2graA 277 53.89 2izzA 322 54.89 2qwwA 154 54.95 2o1mA 258 55.17 2o3fA 111 55.24 2bnmA 198 55.94 a.35.1.3,b.82.1.10 128835,128836 1b3uA 588 57.35 a.118.1.2 19135 2btzA 394 57.77 1wa5B 530 60.48 a.118.1.1 114432 2ibpA 409 62.16 2vl6A 268 62.22 2z0xA 158 62.27 1kz7A 353 62.28 a.87.1.1,b.55.1.1 73333,73334 1auiB 169 62.63 a.39.1.5 17325 1y9qA 192 63.14 a.35.1.8,b.82.1.15 116592,116593 2c1mA 424 64.11 2q0zX 339 64.17 2de3A 365 65.82 1u61A 138 66.04 a.149.1.1 107696 2bk9A 153 66.97 2ifuA 307 67.38 1xnfA 275 71.01 a.118.8.1 115580 2b5aA 77 73.20 a.35.1.3 127882 2erbA 125 73.95 1aj2A 282 74.05 c.1.21.1 29665 2pexA 153 74.15 1px5A 349 76.00 a.160.1.2,d.218.1.6 95277,95278 1gqnA 252 76.83 c.1.10.1 90514 1wdvA 152 77.04 d.116.1.1 114539 2pbyA 308 79.46 1m0uA 249 79.96 a.45.1.1,c.47.1.5 78359,78360 1vz0A 230 80.31 a.4.14.1,d.268.1.1 108929,108930 2bv6A 142 80.51 2bkmA 128 81.15 1z9hA 290 81.63 a.45.1.1,c.47.1.5 124758,124759 1y89A 238 81.70 2f4mB 61 81.89 a.189.1.1 132931 1ne7A 289 82.76 c.124.1.1 91833 1qbkB 890 82.86 a.118.1.1 19127 1k3yA 221 83.16 a.45.1.1,c.47.1.5 77245,77246 1ouvA 273 86.47 a.118.18.1 93570 1qsaA 618 87.19 a.118.5.1,d.2.1.6 19182,36988 1pgtA 210 87.85 a.45.1.1,c.47.1.5 17515,32809 2yxlA 450 88.01 1munA 225 88.15 a.96.1.2 18744 1lrvA 244 88.85 a.118.1.5 19146