# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.49e-23 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 4.22e-23 2pbxA 203 4.49e-23 2hyjA 200 7.26e-23 3ccyA 203 1.03e-22 2ibdA 204 1.11e-22 1rktA 205 1.32e-22 a.4.1.9,a.121.1.1 97623,97624 1t56A 216 1.91e-22 a.4.1.9,a.121.1.1 106428,106429 1jt6A 188 2.04e-22 a.4.1.9,a.121.1.1 67247,67248 1qvtA 194 2.32e-22 a.4.1.9,a.121.1.1 104602,104603 3bhqA 211 3.63e-22 1zkgA 212 4.35e-22 a.4.1.9,a.121.1.1 125194,125195 2g7sA 194 4.56e-22 a.4.1.9,a.121.1.1 134737,134738 3cdlA 203 4.62e-22 3c2bA 221 4.69e-22 2qtqA 213 4.90e-22 1z77A 200 5.98e-22 a.4.1.9,a.121.1.1 124588,124589 2f07A 197 8.25e-22 3bruA 222 9.41e-22 2id6A 202 1.11e-21 2fq4A 192 1.16e-21 a.4.1.9,a.121.1.1 133937,133938 2qcoA 210 1.32e-21 3crjA 199 1.37e-21 2iekA 200 1.61e-21 2raeA 207 2.02e-21 1ui5A 215 2.08e-21 a.4.1.9,a.121.1.1 107856,107857 3bcgA 215 2.44e-21 2rasA 212 2.75e-21 1pb6A 212 3.01e-21 a.4.1.9,a.121.1.1 88017,88018 3cwrA 208 3.02e-21 2genA 197 3.54e-21 a.4.1.9,a.121.1.1 135062,135063 2zb9A 214 4.05e-21 2gfnA 209 5.05e-21 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 5.30e-21 2o7tA 199 6.77e-21 2qkoA 215 1.08e-20 2dg7A 195 1.09e-20 2hytA 197 1.51e-20 2zcmA 192 1.67e-20 2id3A 225 2.61e-20 a.4.1.9,a.121.1.1 137261,137262 2qibA 231 2.73e-20 2iaiA 230 2.94e-20 2g3bA 208 3.19e-20 a.4.1.9,a.121.1.1 134558,134559 2jj7A 186 3.24e-20 2tct 207 4.00e-20 2d6yA 202 7.03e-20 a.4.1.9,a.121.1.1 131313,131314 2optA 234 7.79e-20 3b81A 203 8.29e-20 3cjdA 198 8.49e-20 1sgmA 191 9.05e-20 a.4.1.9,a.121.1.1 105537,105538 2np5A 203 1.46e-19 a.4.1.9,a.121.1.1 138424,138425 1zk8A 183 1.56e-19 a.4.1.9,a.121.1.1 125177,125178 2o7oA 207 1.58e-19 a.4.1.9,a.121.1.1 138930,138931 2i10A 202 1.80e-19 a.4.1.9,a.121.1.1 136960,136961 2rekA 199 2.40e-19 2of7A 260 2.70e-19 3bniA 229 3.71e-19 3colA 196 4.12e-19 2hkuA 215 4.67e-19 3bjbA 207 4.74e-19 2fx0A 201 4.83e-19 a.4.1.9,a.121.1.1 134269,134270 2iu5A 195 5.60e-19 2g7gA 213 6.10e-19 a.4.1.9,a.121.1.1 134732,134733 2fbqA 235 7.93e-19 a.4.1.9,a.121.1.1 133256,133257 3bqyA 209 8.09e-19 2fd5A 180 1.14e-18 a.4.1.9,a.121.1.1 133291,133292 2q24A 194 1.69e-18 1a6i 217 1.76e-18 2oi8A 216 2.07e-18 2oerA 214 2.48e-18 2vprA 207 3.92e-18 1z0xA 220 4.19e-18 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 4.78e-18 2yveA 185 7.07e-18 2hxoA 237 7.73e-18 2guhA 214 1.09e-17 2eh3A 179 1.20e-17 1v7bA 185 1.28e-17 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 1.49e-17 a.4.1.9,a.121.1.1 106295,106296 2qwtA 196 2.62e-17 2g7lA 243 1.60e-15 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.9345 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.081 2v9vA 135 2.523 2dt5A 211 2.802 a.4.5.38,c.2.1.12 131708,131709 2ev0A 142 3.517 a.4.5.24,a.76.1.1 132413,132414 2fnaA 357 4.585 a.4.5.11,c.37.1.20 133809,133810 2qq9A 226 4.939 2gsqA 202 5.869 a.45.1.1,c.47.1.5 17715,33009 1z5hA 780 6.880 1nhyA 219 7.662 a.45.1.1,c.47.1.5 80520,80521 1bl0A 129 7.795 a.4.1.8,a.4.1.8 16053,16054 3co4A 312 8.499 2pg4A 95 9.238 2rn7A 108 11.14 1x9fB 145 12.02 a.1.1.2 114984 2ondA 308 12.13 2ftsA 419 13.34 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1oywA 523 13.88 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1a0pA 290 14.03 a.60.9.1,d.163.1.1 18105,42165 1zy9A 564 14.07 b.30.5.11,c.1.8.13 125813,125814 1xcbA 211 14.22 a.4.5.38,c.2.1.12 109552,109553 2qguA 211 14.77 1xsvA 113 15.32 a.4.13.3 116003 2ahrA 259 15.67 a.100.1.10,c.2.1.6 126775,126776 1wsuA 124 17.79 a.4.5.35,a.4.5.35 121245,121246 2v1xA 591 18.78 1s69A 124 19.34 a.1.1.1 105305 2zfoC 147 19.86 1zcaA 359 20.21 a.66.1.1,c.37.1.8 124897,124898 1x9fA 151 20.81 a.1.1.2 114983 2nszA 129 22.15 a.118.1.14 138560 1oe8A 211 22.26 a.45.1.1,c.47.1.5 86905,86906 1fseA 74 23.64 a.4.6.2 60000 1v2aA 210 23.78 a.45.1.1,c.47.1.5 100263,100264 1tu7A 208 25.25 a.45.1.1,c.47.1.5 112653,112654 1dlyA 164 25.45 a.1.1.1 14983 1a5tA 334 25.51 a.80.1.1,c.37.1.20 18450,32423 1xo0A 324 25.57 a.60.9.1,d.163.1.1 115674,115675 2ho1A 252 26.64 1yqgA 263 27.02 2dh2A 424 28.23 1lmb3 92 28.46 1ee4A 423 30.33 a.118.1.1 19128 2q4uA 272 31.15 2dnxA 130 31.37 1u8bA 133 31.86 1l3lA 234 31.89 a.4.6.2,d.110.5.1 73541,73542 1xqsA 280 32.62 a.118.1.21 122243 2ifuA 307 33.20 1lbkA 208 34.38 a.45.1.1,c.47.1.5 73809,73810 1zljA 78 34.77 1kgnA 329 36.39 a.25.1.2 68584 1b6g 310 37.24 1a0p 290 37.44 1je8A 82 37.95 a.4.6.2 77108 1ji6A 589 39.15 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1b0nA 111 39.86 a.34.1.1,a.35.1.3 17001,17064 2a2rA 210 41.29 a.45.1.1,c.47.1.5 126058,126059 2plc 274 43.32 1yhuB 144 44.12 1sfxA 109 45.03 a.4.5.50 105505 1pq1A 196 45.71 f.1.4.1 94986 2dskA 311 45.71 1ijbA 202 46.31 c.62.1.1 71229 1jlvA 209 47.16 a.45.1.1,c.47.1.5 71729,71730 1y7yA 74 48.33 a.35.1.3 122729 1y89A 238 48.42 2btzA 394 48.62 2bk9A 153 50.08 2ihdA 155 50.28 1gqnA 252 50.31 c.1.10.1 90514 1vflA 356 50.80 c.1.9.1 120041 2ictA 94 52.15 2c1mA 424 54.30 2dtrA 226 57.51 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1utxA 66 59.77 a.35.1.3 108034 2ibpA 409 61.13 1ouvA 273 61.91 a.118.18.1 93570 1u61A 138 62.33 a.149.1.1 107696 2graA 277 62.33 1mkmA 249 62.35 a.4.5.33,d.110.2.2 79242,79243 1wa5B 530 62.39 a.118.1.1 114432 2izzA 322 64.24 1b3uA 588 64.40 a.118.1.2 19135 1k3yA 221 65.38 a.45.1.1,c.47.1.5 77245,77246 1ukz 203 65.77 3ciwA 348 66.05 2nrlA 147 66.55 1im8A 244 66.71 c.66.1.14 66212 2o1mA 258 66.72 2ii2A 310 67.81 1jdhA 529 68.02 a.118.1.1 66549 1ne7A 289 68.90 c.124.1.1 91833 2pbyA 308 72.58 1y9qA 192 72.72 a.35.1.8,b.82.1.15 116592,116593 1auiB 169 72.87 a.39.1.5 17325 1rzsA 61 72.98 a.35.1.2 105139 1qbkB 890 73.13 a.118.1.1 19127 1lucA 355 73.36 c.1.16.1 29547 2o3fA 111 73.60 2nvoA 535 73.70 1ho8A 480 73.92 a.118.1.9 61107 2de3A 365 74.69 2ieeA 271 74.89 1xnfA 275 75.07 a.118.8.1 115580 2a2mA 258 75.26 a.132.1.3 126039 2vq2A 225 75.38 2e0aA 394 75.89 1dd9A 338 75.91 e.13.1.1 43254 1px5A 349 76.20 a.160.1.2,d.218.1.6 95277,95278 1fx7A 230 76.72 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2cx5A 158 77.23 1m0uA 249 78.16 a.45.1.1,c.47.1.5 78359,78360 2erbA 125 80.08 1resA 43 80.17 a.4.1.2 16023 2z0xA 158 80.38 3b8dA 363 80.51 2c78A 405 80.95 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 2am1A 454 83.51 2q0zX 339 83.82 2bnmA 198 83.83 a.35.1.3,b.82.1.10 128835,128836 2pvuA 272 84.17 1lrvA 244 84.34 a.118.1.5 19146 1on2A 142 85.09 a.4.5.24,a.76.1.1 87103,87104 2dfwA 396 85.40 1f1eA 154 85.62 a.22.1.2 64927 1z91A 147 86.02 a.4.5.28 124736 2rdxA 379 87.92 2bkxA 242 87.95 1ny1A 240 89.20 c.6.2.3 86395 2bv6A 142 89.60 2o8xA 70 89.88