# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qtqA 213 1.08e-20 2uxuA 210 1.57e-20 1vi0A 206 1.91e-20 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.96e-20 2ibdA 204 2.58e-20 1t56A 216 3.28e-20 a.4.1.9,a.121.1.1 106428,106429 2hyjA 200 4.06e-20 2f07A 197 4.33e-20 3cdlA 203 6.14e-20 2genA 197 9.96e-20 a.4.1.9,a.121.1.1 135062,135063 3bruA 222 1.21e-19 2g7sA 194 1.38e-19 a.4.1.9,a.121.1.1 134737,134738 3ccyA 203 1.87e-19 2rasA 212 2.24e-19 1qvtA 194 2.47e-19 a.4.1.9,a.121.1.1 104602,104603 3crjA 199 2.59e-19 2fq4A 192 2.61e-19 a.4.1.9,a.121.1.1 133937,133938 1pb6A 212 2.86e-19 a.4.1.9,a.121.1.1 88017,88018 3bhqA 211 3.14e-19 1jt6A 188 3.43e-19 a.4.1.9,a.121.1.1 67247,67248 3bcgA 215 3.87e-19 1rktA 205 5.06e-19 a.4.1.9,a.121.1.1 97623,97624 1zkgA 212 7.48e-19 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 8.82e-19 a.4.1.9,a.121.1.1 124588,124589 2nx4A 194 9.43e-19 3c2bA 221 9.79e-19 3cjdA 198 1.13e-18 2gfnA 209 1.24e-18 a.4.1.9,a.121.1.1 135101,135102 1ui5A 215 1.25e-18 a.4.1.9,a.121.1.1 107856,107857 2dg7A 195 1.31e-18 2jj7A 186 1.86e-18 2iaiA 230 1.90e-18 2hytA 197 2.02e-18 3cwrA 208 2.13e-18 2raeA 207 2.15e-18 2id6A 202 2.86e-18 2id3A 225 2.93e-18 a.4.1.9,a.121.1.1 137261,137262 2qcoA 210 3.08e-18 2iekA 200 3.94e-18 2g3bA 208 4.76e-18 a.4.1.9,a.121.1.1 134558,134559 1sgmA 191 6.48e-18 a.4.1.9,a.121.1.1 105537,105538 2o7tA 199 8.06e-18 3b81A 203 8.11e-18 2zb9A 214 9.69e-18 2i10A 202 1.08e-17 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 1.87e-17 a.4.1.9,a.121.1.1 134269,134270 2qkoA 215 2.19e-17 2d6yA 202 2.81e-17 a.4.1.9,a.121.1.1 131313,131314 2of7A 260 3.11e-17 2np5A 203 5.86e-17 a.4.1.9,a.121.1.1 138424,138425 2qibA 231 6.57e-17 1zk8A 183 6.67e-17 a.4.1.9,a.121.1.1 125177,125178 2optA 234 7.45e-17 2zcmA 192 7.63e-17 2rekA 199 8.49e-17 2hkuA 215 8.81e-17 2fd5A 180 9.80e-17 a.4.1.9,a.121.1.1 133291,133292 3colA 196 9.89e-17 3bniA 229 1.16e-16 3bjbA 207 1.29e-16 2tct 207 1.54e-16 2fbqA 235 2.04e-16 a.4.1.9,a.121.1.1 133256,133257 2q24A 194 2.22e-16 2oerA 214 2.26e-16 2qwtA 196 4.07e-16 3bqyA 209 4.14e-16 2o7oA 207 4.77e-16 a.4.1.9,a.121.1.1 138930,138931 2guhA 214 6.48e-16 2iu5A 195 7.81e-16 1a6i 217 7.95e-16 2vprA 207 9.63e-16 1z0xA 220 1.07e-15 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 2.11e-15 2dg8A 193 2.38e-15 2yveA 185 4.34e-15 2g7gA 213 7.19e-15 a.4.1.9,a.121.1.1 134732,134733 2eh3A 179 7.40e-15 1v7bA 185 9.62e-15 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 3.20e-14 1t33A 224 8.31e-14 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 9.03e-14 a.4.1.9,a.121.1.1 134734,134735 2gsqA 202 2.664 a.45.1.1,c.47.1.5 17715,33009 2jn6A 97 2.756 1hlvA 131 4.110 a.4.1.7,a.4.1.7 65854,65855 2rn7A 108 8.439 1wsuA 124 10.56 a.4.5.35,a.4.5.35 121245,121246 2pzzA 147 13.06 1tu7A 208 13.53 a.45.1.1,c.47.1.5 112653,112654 2qq9A 226 14.41 3bbyA 215 14.87 1on2A 142 15.96 a.4.5.24,a.76.1.1 87103,87104 3co4A 312 17.17 1ag9A 175 17.47 c.23.5.1 31178 1zcaA 359 18.01 a.66.1.1,c.37.1.8 124897,124898 1xcbA 211 18.56 a.4.5.38,c.2.1.12 109552,109553 1zy9A 564 19.85 b.30.5.11,c.1.8.13 125813,125814 1xjdA 345 19.93 d.144.1.7 115388 2pg4A 95 19.94 1ijbA 202 22.67 c.62.1.1 71229 1sfxA 109 23.71 a.4.5.50 105505 1k3yA 221 25.24 a.45.1.1,c.47.1.5 77245,77246 2dt5A 211 25.91 a.4.5.38,c.2.1.12 131708,131709 1v2aA 210 28.50 a.45.1.1,c.47.1.5 100263,100264 1u8bA 133 28.92 1lbkA 208 30.94 a.45.1.1,c.47.1.5 73809,73810 1b0nA 111 31.00 a.34.1.1,a.35.1.3 17001,17064 2imiA 221 31.26 1ciyA 590 31.72 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1a0dA 440 32.27 c.1.15.3 29533 1vpbA 451 32.61 d.283.1.1 113950 2am1A 454 33.11 1n3yA 198 35.93 c.62.1.1 79976 2ev0A 142 37.14 a.4.5.24,a.76.1.1 132413,132414 17gsA 210 37.18 a.45.1.1,c.47.1.5 17524,32818 2v9vA 135 38.21 2h09A 155 42.11 1b3uA 588 42.32 a.118.1.2 19135 1jlvA 209 42.74 a.45.1.1,c.47.1.5 71729,71730 1tadA 324 43.06 a.66.1.1,c.37.1.8 18194,32077 2bnmA 198 43.54 a.35.1.3,b.82.1.10 128835,128836 2pbqA 178 44.80 1y7yA 74 45.40 a.35.1.3 122729 2pvuA 272 45.73 2dskA 311 47.33 1shuX 182 47.50 c.62.1.1 98882 2plc 274 48.96 2za4B 90 49.89 3ciwA 348 51.25 1uyrA 737 52.68 c.14.1.4,c.14.1.4 100188,100189 2ew8A 249 53.33 c.2.1.2 132447 2ondA 308 53.38 1m0uA 249 56.07 a.45.1.1,c.47.1.5 78359,78360 1vzoA 355 56.46 d.144.1.7 108971 1jlwA 219 56.96 a.45.1.1,c.47.1.5 71741,71742 1aw9A 216 57.49 a.45.1.1,c.47.1.5 17736,33030 1yixA 265 57.84 c.1.9.12 123371 2a2rA 210 58.27 a.45.1.1,c.47.1.5 126058,126059 1pgtA 210 58.54 a.45.1.1,c.47.1.5 17515,32809 1x8bA 289 61.65 1wdjA 187 62.37 c.52.1.27 114536 3cbuA 214 62.50 1ykwA 435 64.14 c.1.14.1,d.58.9.1 123565,123566 1xsvA 113 64.66 a.4.13.3 116003 1oe8A 211 64.80 a.45.1.1,c.47.1.5 86905,86906 2d2mC 147 65.70 1ji6A 589 66.02 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2c3nA 247 67.16 1rd5A 262 67.76 c.1.2.4 111772 1no5A 114 69.44 d.218.1.5 92014 2q0zX 339 69.56 2f4mB 61 69.82 a.189.1.1 132931 1wtyA 119 72.06 a.24.16.2 114880 1lmb3 92 72.24 2ftsA 419 72.44 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1y9qA 192 72.64 a.35.1.8,b.82.1.15 116592,116593 1vf1A 229 73.42 2amxA 376 74.13 c.1.9.1 127024 1zljA 78 74.58 2qvwA 756 74.69 2a2cA 478 76.28 1ny1A 240 76.60 c.6.2.3 86395 1mkzA 172 77.72 c.57.1.1 84998 2oi2A 292 77.97 2r4vA 247 78.18 2q4uA 272 79.59 1w7jA 795 79.82 b.34.3.1,c.37.1.9 120688,120689 2qwwA 154 80.49 2cz2A 223 81.20 2d8dA 90 82.22 a.130.1.1 131329 3b7hA 78 82.29 1n2aA 201 82.33 a.45.1.1,c.47.1.5 91553,91554 2nm0A 253 82.75 2gdrA 202 83.73 1y5eA 169 84.90 c.57.1.1 122632 1resA 43 85.08 a.4.1.2 16023 2i3dA 249 86.00 1vbuA 328 86.45 c.1.8.3 119963 1v4aA 440 87.58 a.24.16.4,d.218.1.9 108350,108351 2hnlA 225 87.77 2qkmB 266 88.13 1b4pA 217 88.39 a.45.1.1,c.47.1.5 83158,83159 1uuqA 440 88.59 c.1.8.3 100015 1i60A 278 88.69 c.1.15.4 71118 2d93A 134 89.65