# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.92e-21 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 2.15e-21 2ibdA 204 2.62e-21 2hyjA 200 5.13e-21 2uxuA 210 6.13e-21 3ccyA 203 6.63e-21 2qtqA 213 8.03e-21 1t56A 216 9.63e-21 a.4.1.9,a.121.1.1 106428,106429 1rktA 205 1.31e-20 a.4.1.9,a.121.1.1 97623,97624 2g7sA 194 1.42e-20 a.4.1.9,a.121.1.1 134737,134738 1pb6A 212 1.71e-20 a.4.1.9,a.121.1.1 88017,88018 1qvtA 194 1.98e-20 a.4.1.9,a.121.1.1 104602,104603 3bhqA 211 2.03e-20 2rasA 212 2.25e-20 1jt6A 188 2.33e-20 a.4.1.9,a.121.1.1 67247,67248 2fq4A 192 2.35e-20 a.4.1.9,a.121.1.1 133937,133938 1ui5A 215 2.37e-20 a.4.1.9,a.121.1.1 107856,107857 2f07A 197 2.57e-20 3bruA 222 3.05e-20 1z77A 200 4.04e-20 a.4.1.9,a.121.1.1 124588,124589 2genA 197 4.76e-20 a.4.1.9,a.121.1.1 135062,135063 3c2bA 221 4.80e-20 1zkgA 212 4.92e-20 a.4.1.9,a.121.1.1 125194,125195 2iekA 200 5.15e-20 2id6A 202 5.37e-20 3cdlA 203 5.48e-20 3crjA 199 6.68e-20 3cwrA 208 8.76e-20 3bcgA 215 9.16e-20 2raeA 207 1.08e-19 2hytA 197 1.81e-19 2dg7A 195 1.95e-19 2zb9A 214 2.21e-19 2jj7A 186 2.71e-19 2qcoA 210 2.71e-19 2zcmA 192 2.99e-19 2nx4A 194 3.23e-19 2o7tA 199 3.51e-19 2gfnA 209 3.56e-19 a.4.1.9,a.121.1.1 135101,135102 2iaiA 230 3.68e-19 2qkoA 215 5.26e-19 2qibA 231 6.99e-19 2tct 207 9.51e-19 3cjdA 198 1.06e-18 2id3A 225 1.33e-18 a.4.1.9,a.121.1.1 137261,137262 1sgmA 191 1.58e-18 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 1.59e-18 a.4.1.9,a.121.1.1 131313,131314 3b81A 203 1.83e-18 2optA 234 2.13e-18 2fx0A 201 2.41e-18 a.4.1.9,a.121.1.1 134269,134270 2i10A 202 2.51e-18 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 3.22e-18 a.4.1.9,a.121.1.1 125177,125178 2rekA 199 3.91e-18 2g3bA 208 5.05e-18 a.4.1.9,a.121.1.1 134558,134559 3bjbA 207 5.65e-18 2fbqA 235 5.82e-18 a.4.1.9,a.121.1.1 133256,133257 3colA 196 5.88e-18 3bqyA 209 5.89e-18 2o7oA 207 6.13e-18 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 1.00e-17 2hkuA 215 1.11e-17 2q24A 194 1.31e-17 2fd5A 180 1.39e-17 a.4.1.9,a.121.1.1 133291,133292 2np5A 203 1.60e-17 a.4.1.9,a.121.1.1 138424,138425 2of7A 260 2.01e-17 2g7gA 213 2.69e-17 a.4.1.9,a.121.1.1 134732,134733 2vprA 207 2.82e-17 1a6i 217 3.79e-17 2iu5A 195 4.18e-17 2oi8A 216 4.67e-17 1z0xA 220 6.17e-17 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 9.07e-17 2oerA 214 9.29e-17 2eh3A 179 1.16e-16 2guhA 214 1.19e-16 2hxoA 237 1.91e-16 2yveA 185 2.28e-16 1v7bA 185 2.64e-16 a.4.1.9,a.121.1.1 119861,119862 2qwtA 196 2.66e-16 1t33A 224 1.67e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 2.53e-14 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 0.3505 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.4105 2dt5A 211 1.135 a.4.5.38,c.2.1.12 131708,131709 2v9vA 135 1.267 2qq9A 226 1.343 2ev0A 142 1.723 a.4.5.24,a.76.1.1 132413,132414 1wsuA 124 2.916 a.4.5.35,a.4.5.35 121245,121246 2rn7A 108 3.073 2pg4A 95 4.522 1xsvA 113 4.706 a.4.13.3 116003 1sfxA 109 5.445 a.4.5.50 105505 1xcbA 211 6.361 a.4.5.38,c.2.1.12 109552,109553 1on2A 142 6.490 a.4.5.24,a.76.1.1 87103,87104 1bl0A 129 7.741 a.4.1.8,a.4.1.8 16053,16054 1nhyA 219 8.771 a.45.1.1,c.47.1.5 80520,80521 2h09A 155 9.406 2v1xA 591 10.03 2ahrA 259 10.19 a.100.1.10,c.2.1.6 126775,126776 2ftsA 419 10.54 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 3co4A 312 12.31 1v2aA 210 12.90 a.45.1.1,c.47.1.5 100263,100264 1y7yA 74 17.95 a.35.1.3 122729 2dtrA 226 18.28 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1l3lA 234 18.63 a.4.6.2,d.110.5.1 73541,73542 2o3fA 111 22.95 2f4mB 61 23.51 a.189.1.1 132931 3b7hA 78 23.75 2gsqA 202 25.20 a.45.1.1,c.47.1.5 17715,33009 2ictA 94 25.49 2dh2A 424 25.78 1fseA 74 26.85 a.4.6.2 60000 1je8A 82 27.41 a.4.6.2 77108 1y9qA 192 27.47 a.35.1.8,b.82.1.15 116592,116593 1zcaA 359 28.07 a.66.1.1,c.37.1.8 124897,124898 1zljA 78 28.08 2pl2A 217 29.01 1utxA 66 29.56 a.35.1.3 108034 1wa5B 530 29.58 a.118.1.1 114432 1fx7A 230 31.89 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2b5aA 77 32.49 a.35.1.3 127882 1b0nA 111 32.62 a.34.1.1,a.35.1.3 17001,17064 1g7oA 215 32.69 a.45.1.1,c.47.1.5 60332,60333 2c3nA 247 34.00 1p2xA 159 34.57 a.40.1.1 104062 1tw9A 206 34.75 a.45.1.1,c.47.1.5 107381,107382 1s69A 124 35.90 a.1.1.1 105305 1a0p 290 36.33 1oywA 523 36.65 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2izzA 322 36.84 3bddA 142 36.84 1u8bA 133 36.90 1resA 43 38.69 a.4.1.2 16023 2nszA 129 39.04 a.118.1.14 138560 2de3A 365 39.36 1xo0A 324 39.43 a.60.9.1,d.163.1.1 115674,115675 2d4zA 250 39.84 d.37.1.1,d.37.1.1 131260,131261 1yqgA 263 40.48 1z91A 147 41.28 a.4.5.28 124736 1ijbA 202 41.54 c.62.1.1 71229 1oe8A 211 43.36 a.45.1.1,c.47.1.5 86905,86906 2ebyA 113 43.53 1gqnA 252 43.90 c.1.10.1 90514 1z9hA 290 44.31 a.45.1.1,c.47.1.5 124758,124759 1f1eA 154 45.65 a.22.1.2 64927 2rcyA 262 46.04 1a0pA 290 47.08 a.60.9.1,d.163.1.1 18105,42165 2graA 277 47.79 1a0dA 440 48.52 c.1.15.3 29533 1zy9A 564 48.62 b.30.5.11,c.1.8.13 125813,125814 1dlyA 164 48.69 a.1.1.1 14983 1px5A 349 49.61 a.160.1.2,d.218.1.6 95277,95278 2hq2A 354 50.13 e.62.1.1 136656 1aj2 282 51.82 1mkmA 249 52.21 a.4.5.33,d.110.2.2 79242,79243 2vg3A 284 53.73 2on5A 206 54.35 2j0pA 345 54.78 e.62.1.1 137903 1x9fB 145 55.70 a.1.1.2 114984 2pzzA 147 55.89 1xm9A 457 55.95 a.118.1.24 122142 1r8eA 278 56.41 a.6.1.3,d.60.1.1 104843,104844 1g8lA 411 57.01 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2r1jL 68 57.66 2cro 71 59.27 1aj2A 282 61.12 c.1.21.1 29665 1bw0A 416 61.13 c.67.1.1 34385 1r69A 69 61.39 a.35.1.2 17028 1eyeA 280 61.49 c.1.21.1 29672 2imsA 171 61.53 1a0cA 438 63.19 c.1.15.3 29529 1rzsA 61 63.47 a.35.1.2 105139 2bnmA 198 63.56 a.35.1.3,b.82.1.10 128835,128836 1lmb3 92 64.16 2pvuA 272 64.92 2e2eA 177 65.18 1r69 69 65.25 1adrA 76 65.51 a.35.1.2 17042 1ouvA 273 67.97 a.118.18.1 93570 1ny1A 240 71.58 c.6.2.3 86395 1wd6A 123 71.62 d.58.4.12 114525 3ciwA 348 72.23 3cmgA 667 72.82 1lvaA 258 73.21 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3cecA 104 75.62 1uz5A 402 76.59 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2iyvA 184 76.83 c.37.1.2 137812 3cdhA 155 77.24 2nqrA 411 77.65 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2plcA 274 78.21 c.1.18.2 29614 3cbuA 214 78.44 2cvdA 198 79.83 a.45.1.1,c.47.1.5 130861,130862 1vh0A 161 80.52 c.116.1.3 100626 2qwwA 154 80.60 2rfpA 171 81.49 1r1dA 247 82.99 c.69.1.29 96813 2pgd 482 83.02 2nt0A 497 83.39 b.71.1.2,c.1.8.3 138561,138562 2zg5A 397 83.47 1m48A 133 83.69 a.26.1.2 74443 1aw9A 216 84.08 a.45.1.1,c.47.1.5 17736,33030 2d1hA 109 85.42 a.4.5.50 131125 1s3jA 155 87.98 a.4.5.28 98437 1i2kA 269 88.22 e.17.1.1 90661 2cz2A 223 88.50 1vbjA 281 88.99 1j5yA 187 89.69 a.4.5.1,d.94.2.1 71592,71593