# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 3.52e-22 1vi0A 206 6.93e-22 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 1.03e-21 2uxuA 210 1.81e-21 1t56A 216 2.14e-21 a.4.1.9,a.121.1.1 106428,106429 3ccyA 203 2.22e-21 2hyjA 200 2.77e-21 1pb6A 212 4.02e-21 a.4.1.9,a.121.1.1 88017,88018 2g7sA 194 4.42e-21 a.4.1.9,a.121.1.1 134737,134738 2qtqA 213 4.65e-21 1rktA 205 6.45e-21 a.4.1.9,a.121.1.1 97623,97624 1jt6A 188 9.46e-21 a.4.1.9,a.121.1.1 67247,67248 1ui5A 215 1.07e-20 a.4.1.9,a.121.1.1 107856,107857 1qvtA 194 1.09e-20 a.4.1.9,a.121.1.1 104602,104603 2f07A 197 1.17e-20 3bhqA 211 1.21e-20 3cdlA 203 1.22e-20 2rasA 212 1.41e-20 3bruA 222 1.43e-20 3bcgA 215 1.64e-20 2genA 197 1.74e-20 a.4.1.9,a.121.1.1 135062,135063 2fq4A 192 1.77e-20 a.4.1.9,a.121.1.1 133937,133938 1z77A 200 2.11e-20 a.4.1.9,a.121.1.1 124588,124589 1zkgA 212 2.32e-20 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 2.55e-20 2iekA 200 2.59e-20 3c2bA 221 2.64e-20 3crjA 199 3.04e-20 2raeA 207 4.47e-20 2jj7A 186 5.72e-20 3cwrA 208 6.00e-20 2dg7A 195 7.47e-20 2id3A 225 7.66e-20 a.4.1.9,a.121.1.1 137261,137262 2hytA 197 1.05e-19 2iaiA 230 1.58e-19 2zcmA 192 1.70e-19 2qcoA 210 1.75e-19 2zb9A 214 1.85e-19 2nx4A 194 1.85e-19 2gfnA 209 2.04e-19 a.4.1.9,a.121.1.1 135101,135102 2o7tA 199 2.10e-19 2qkoA 215 4.20e-19 1sgmA 191 5.15e-19 a.4.1.9,a.121.1.1 105537,105538 2qibA 231 5.30e-19 2tct 207 6.23e-19 3cjdA 198 6.35e-19 2d6yA 202 1.08e-18 a.4.1.9,a.121.1.1 131313,131314 3b81A 203 1.17e-18 2fbqA 235 1.19e-18 a.4.1.9,a.121.1.1 133256,133257 2optA 234 1.45e-18 3bqyA 209 1.52e-18 2i10A 202 1.79e-18 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 1.80e-18 a.4.1.9,a.121.1.1 125177,125178 2fx0A 201 2.94e-18 a.4.1.9,a.121.1.1 134269,134270 3bjbA 207 3.60e-18 2g3bA 208 3.63e-18 a.4.1.9,a.121.1.1 134558,134559 2rekA 199 3.87e-18 2hkuA 215 4.15e-18 3colA 196 5.22e-18 2o7oA 207 5.39e-18 a.4.1.9,a.121.1.1 138930,138931 3bniA 229 6.26e-18 2iu5A 195 9.29e-18 2fd5A 180 1.06e-17 a.4.1.9,a.121.1.1 133291,133292 2q24A 194 1.08e-17 2np5A 203 1.22e-17 a.4.1.9,a.121.1.1 138424,138425 2g7gA 213 1.52e-17 a.4.1.9,a.121.1.1 134732,134733 1a6i 217 1.80e-17 2of7A 260 1.86e-17 2vprA 207 2.33e-17 1z0xA 220 3.81e-17 a.4.1.9,a.121.1.1 124334,124335 2oi8A 216 4.08e-17 2hxoA 237 4.91e-17 2dg8A 193 5.13e-17 2oerA 214 5.25e-17 2eh3A 179 1.12e-16 2guhA 214 1.40e-16 2yveA 185 1.50e-16 1v7bA 185 2.01e-16 a.4.1.9,a.121.1.1 119861,119862 2qwtA 196 3.09e-16 1t33A 224 1.18e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 1.85e-14 a.4.1.9,a.121.1.1 134734,134735 1hlvA 131 1.008 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.310 2qq9A 226 1.980 2v9vA 135 2.127 2ev0A 142 2.696 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 2.854 a.4.5.38,c.2.1.12 131708,131709 1p2xA 159 3.699 a.40.1.1 104062 1qv1A 195 4.718 a.39.1.5 96347 1zy9A 564 4.903 b.30.5.11,c.1.8.13 125813,125814 1wsuA 124 6.283 a.4.5.35,a.4.5.35 121245,121246 2pg4A 95 10.18 1on2A 142 11.20 a.4.5.24,a.76.1.1 87103,87104 1xsvA 113 11.42 a.4.13.3 116003 1sfxA 109 14.93 a.4.5.50 105505 2pzzA 147 16.05 2qguA 211 17.02 2d4zA 250 17.05 d.37.1.1,d.37.1.1 131260,131261 2dtvA 397 17.29 2h09A 155 17.39 2yr1A 257 18.08 2ahrA 259 19.31 a.100.1.10,c.2.1.6 126775,126776 1bl0A 129 20.30 a.4.1.8,a.4.1.8 16053,16054 2ieaA 886 20.50 c.36.1.6,c.36.1.10,c.48.1.1 137294,137295,137296 1ijbA 202 21.81 c.62.1.1 71229 2ia2A 265 21.95 2v1xA 591 22.96 1oywA 523 24.23 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1v7pC 200 24.75 c.62.1.1 108408 1a0dA 440 24.80 c.1.15.3 29533 1n3yA 198 27.33 c.62.1.1 79976 1sb8A 352 27.33 c.2.1.2 105410 1vjjA 692 27.77 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 2ftsA 419 27.99 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1ny1A 240 28.30 c.6.2.3 86395 1q06A 135 29.78 a.6.1.3 95493 2gfhA 260 30.03 c.108.1.6 135096 2dtrA 226 30.06 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1d0cA 444 30.68 d.174.1.1 64769 2rn7A 108 31.83 1vhuA 211 32.00 c.50.1.2 100703 2gsqA 202 32.33 a.45.1.1,c.47.1.5 17715,33009 2dskA 311 34.94 1v2aA 210 35.17 a.45.1.1,c.47.1.5 100263,100264 2f4mB 61 35.74 a.189.1.1 132931 1ah7 245 36.20 1xcbA 211 36.65 a.4.5.38,c.2.1.12 109552,109553 1wa5B 530 37.23 a.118.1.1 114432 1s69A 124 37.49 a.1.1.1 105305 2bnxA 386 37.69 a.118.1.23 128861 2pgd 482 38.52 1x9fB 145 38.92 a.1.1.2 114984 2nszA 129 39.56 a.118.1.14 138560 1r1dA 247 40.07 c.69.1.29 96813 2p4qA 497 40.55 1l3lA 234 41.99 a.4.6.2,d.110.5.1 73541,73542 2o09A 189 43.31 1y7yA 74 43.53 a.35.1.3 122729 2imsA 171 44.03 1p0kA 349 44.18 c.1.4.1 87648 2pl2A 217 44.41 2vg3A 284 45.17 1z45A 699 45.58 b.30.5.4,c.2.1.2 124427,124428 1fx7A 230 47.06 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1dlyA 164 48.40 a.1.1.1 14983 3bddA 142 48.47 1vljA 407 48.70 e.22.1.2 108832 1vflA 356 50.15 c.1.9.1 120041 3cc1A 433 50.97 2qt3A 403 51.17 1g6aA 271 51.84 e.3.1.1 42704 2c2aA 258 52.68 a.30.2.1,d.122.1.3 129662,129663 1vh0A 161 53.20 c.116.1.3 100626 1f1eA 154 54.21 a.22.1.2 64927 1tf4A 605 54.23 a.102.1.2,b.2.2.2 18827,22393 1gqnA 252 54.29 c.1.10.1 90514 2o3fA 111 55.23 3b8dA 363 55.36 2c3nA 247 57.05 1o7eA 276 57.17 e.3.1.1 92622 3b7hA 78 58.04 2rfpA 171 58.94 1eyeA 280 60.35 c.1.21.1 29672 1o0yA 260 60.49 c.1.10.1 80756 2e2eA 177 60.93 1me8A 503 62.55 c.1.5.1 79028 2scpA 174 64.28 a.39.1.5 17256 1o26A 232 64.99 d.207.1.1 86566 1kewA 361 65.14 c.2.1.2 68544 1qusA 322 66.03 d.2.1.6 36991 2i9uA 439 66.16 1mf7A 194 66.89 c.62.1.1 84937 2pjoA 268 67.07 1ah7A 245 67.96 a.124.1.1 19339 2on5A 206 68.00 1a0pA 290 68.02 a.60.9.1,d.163.1.1 18105,42165 1udcA 338 69.01 c.2.1.2 29785 2ictA 94 69.73 1fseA 74 71.77 a.4.6.2 60000 1b0nA 111 71.94 a.34.1.1,a.35.1.3 17001,17064 1zljA 78 72.05 2iv2X 715 72.93 b.52.2.2,c.81.1.1 137714,137715 1je8A 82 73.36 a.4.6.2 77108 1wtyA 119 74.80 a.24.16.2 114880 2fnaA 357 74.83 a.4.5.11,c.37.1.20 133809,133810 2eplX 627 75.71 1g79A 218 75.91 b.45.1.1 25752 1xqrA 296 76.07 a.118.1.21 122241 1phkA 298 76.35 d.144.1.7 41635 2pftA 571 76.72 2zg5A 397 76.84 1xo0A 324 76.87 a.60.9.1,d.163.1.1 115674,115675 1yqgA 263 77.28 1utxA 66 77.61 a.35.1.3 108034 1u2xA 474 78.33 c.72.1.3 107622 1ek6A 348 78.70 c.2.1.2 29800 2rcyA 262 78.81 2de3A 365 80.21 2pvqA 201 80.38 1z91A 147 80.45 a.4.5.28 124736 2nvoA 535 80.57 1k77A 260 81.17 c.1.15.5 72096 2zfoC 147 81.49 1r5lA 262 82.59 a.5.3.1,c.13.1.1 97099,97100 2a5sA 284 83.12 c.94.1.1 126178 1js1X 324 83.21 c.78.1.1,c.78.1.1 71834,71835 2f6kA 307 84.51 c.1.9.15 133047 1ydnA 295 85.14 2b5aA 77 85.28 a.35.1.3 127882 2q3zA 687 85.61 3boqA 160 85.62 3cdhA 155 88.29 1t2aA 375 88.92 c.2.1.2 99078 1ooyA 481 89.52 c.124.1.3,c.124.1.2 93388,93389 1wyuB 474 89.80 c.67.1.7 121453