# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.26e-20 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 1.60e-20 2pbxA 203 1.65e-20 2uxuA 210 3.01e-20 3ccyA 203 4.12e-20 2hyjA 200 4.28e-20 2qtqA 213 4.83e-20 1t56A 216 6.03e-20 a.4.1.9,a.121.1.1 106428,106429 2g7sA 194 7.46e-20 a.4.1.9,a.121.1.1 134737,134738 1rktA 205 8.56e-20 a.4.1.9,a.121.1.1 97623,97624 1pb6A 212 1.07e-19 a.4.1.9,a.121.1.1 88017,88018 3bhqA 211 1.27e-19 1qvtA 194 1.30e-19 a.4.1.9,a.121.1.1 104602,104603 2f07A 197 1.82e-19 1ui5A 215 1.89e-19 a.4.1.9,a.121.1.1 107856,107857 1jt6A 188 1.91e-19 a.4.1.9,a.121.1.1 67247,67248 2fq4A 192 2.02e-19 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 2.13e-19 2rasA 212 2.15e-19 1z77A 200 2.38e-19 a.4.1.9,a.121.1.1 124588,124589 2genA 197 2.63e-19 a.4.1.9,a.121.1.1 135062,135063 2iekA 200 2.97e-19 2id6A 202 3.03e-19 3c2bA 221 3.06e-19 1zkgA 212 3.20e-19 a.4.1.9,a.121.1.1 125194,125195 3crjA 199 4.34e-19 3cdlA 203 4.47e-19 3cwrA 208 5.06e-19 3bcgA 215 5.22e-19 2raeA 207 5.59e-19 2dg7A 195 9.68e-19 2hytA 197 1.26e-18 2qcoA 210 1.32e-18 2jj7A 186 1.42e-18 2zb9A 214 1.74e-18 2zcmA 192 1.90e-18 2o7tA 199 2.04e-18 2iaiA 230 2.04e-18 2gfnA 209 2.62e-18 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 2.71e-18 2qibA 231 3.43e-18 2qkoA 215 3.50e-18 2tct 207 4.31e-18 1sgmA 191 5.16e-18 a.4.1.9,a.121.1.1 105537,105538 3cjdA 198 5.34e-18 3b81A 203 1.06e-17 2optA 234 1.08e-17 2d6yA 202 1.40e-17 a.4.1.9,a.121.1.1 131313,131314 2id3A 225 1.56e-17 a.4.1.9,a.121.1.1 137261,137262 1zk8A 183 1.61e-17 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 1.76e-17 a.4.1.9,a.121.1.1 136960,136961 2o7oA 207 1.80e-17 a.4.1.9,a.121.1.1 138930,138931 2rekA 199 2.17e-17 2fx0A 201 2.37e-17 a.4.1.9,a.121.1.1 134269,134270 3colA 196 2.90e-17 3bjbA 207 3.17e-17 2fbqA 235 3.18e-17 a.4.1.9,a.121.1.1 133256,133257 3bqyA 209 3.37e-17 2g3bA 208 3.38e-17 a.4.1.9,a.121.1.1 134558,134559 3bniA 229 3.66e-17 2hkuA 215 5.67e-17 2q24A 194 6.88e-17 2fd5A 180 7.40e-17 a.4.1.9,a.121.1.1 133291,133292 2g7gA 213 8.39e-17 a.4.1.9,a.121.1.1 134732,134733 2of7A 260 1.00e-16 2np5A 203 1.14e-16 a.4.1.9,a.121.1.1 138424,138425 2vprA 207 1.34e-16 1a6i 217 1.57e-16 2oi8A 216 1.98e-16 2iu5A 195 2.08e-16 1z0xA 220 2.21e-16 a.4.1.9,a.121.1.1 124334,124335 2oerA 214 4.55e-16 2dg8A 193 4.56e-16 2eh3A 179 6.01e-16 2guhA 214 6.58e-16 2yveA 185 8.05e-16 2hxoA 237 9.37e-16 1v7bA 185 1.17e-15 a.4.1.9,a.121.1.1 119861,119862 2qwtA 196 1.98e-15 1t33A 224 7.91e-15 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 8.47e-14 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.5753 1hlvA 131 0.6131 a.4.1.7,a.4.1.7 65854,65855 2qq9A 226 2.032 2dt5A 211 2.110 a.4.5.38,c.2.1.12 131708,131709 2v9vA 135 2.273 2ev0A 142 2.521 a.4.5.24,a.76.1.1 132413,132414 2rn7A 108 4.403 1xsvA 113 5.233 a.4.13.3 116003 2pg4A 95 6.554 1wsuA 124 6.586 a.4.5.35,a.4.5.35 121245,121246 1xcbA 211 9.874 a.4.5.38,c.2.1.12 109552,109553 3co4A 312 10.46 1bl0A 129 10.61 a.4.1.8,a.4.1.8 16053,16054 1nhyA 219 11.82 a.45.1.1,c.47.1.5 80520,80521 1on2A 142 12.54 a.4.5.24,a.76.1.1 87103,87104 2ftsA 419 12.56 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2dh2A 424 12.87 1sfxA 109 13.04 a.4.5.50 105505 1zcaA 359 15.88 a.66.1.1,c.37.1.8 124897,124898 2v1xA 591 15.90 2ahrA 259 17.42 a.100.1.10,c.2.1.6 126775,126776 2h09A 155 19.44 1y7yA 74 19.68 a.35.1.3 122729 1v2aA 210 20.71 a.45.1.1,c.47.1.5 100263,100264 1ijbA 202 24.17 c.62.1.1 71229 1a0dA 440 25.59 c.1.15.3 29533 1l3lA 234 26.17 a.4.6.2,d.110.5.1 73541,73542 1g7oA 215 29.76 a.45.1.1,c.47.1.5 60332,60333 2gsqA 202 29.84 a.45.1.1,c.47.1.5 17715,33009 1y9qA 192 30.58 a.35.1.8,b.82.1.15 116592,116593 2ictA 94 32.61 1zy9A 564 32.62 b.30.5.11,c.1.8.13 125813,125814 2o3fA 111 32.76 1gqnA 252 33.16 c.1.10.1 90514 2f4mB 61 33.25 a.189.1.1 132931 1a0p 290 33.63 3b7hA 78 36.65 2dtrA 226 37.46 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1wa5B 530 38.27 a.118.1.1 114432 2pl2A 217 39.01 1ny1A 240 39.05 c.6.2.3 86395 1a0pA 290 39.45 a.60.9.1,d.163.1.1 18105,42165 2nszA 129 40.46 a.118.1.14 138560 1a0cA 438 40.66 c.1.15.3 29529 1f1eA 154 41.30 a.22.1.2 64927 1zljA 78 41.66 1je8A 82 42.90 a.4.6.2 77108 1x9fB 145 42.98 a.1.1.2 114984 2vg3A 284 44.36 3cmgA 667 44.37 1utxA 66 44.45 a.35.1.3 108034 1fseA 74 44.66 a.4.6.2 60000 2b5aA 77 44.92 a.35.1.3 127882 1p2xA 159 46.10 a.40.1.1 104062 2pvuA 272 46.56 1tw9A 206 49.35 a.45.1.1,c.47.1.5 107381,107382 1b0nA 111 49.88 a.34.1.1,a.35.1.3 17001,17064 1aj2 282 50.18 2c3nA 247 50.49 2am1A 454 50.77 2hq2A 354 50.83 e.62.1.1 136656 2o09A 189 50.86 1oe8A 211 51.89 a.45.1.1,c.47.1.5 86905,86906 2rcyA 262 54.31 2izzA 322 54.65 1aj2A 282 56.69 c.1.21.1 29665 2plcA 274 57.11 c.1.18.2 29614 1xo0A 324 57.14 a.60.9.1,d.163.1.1 115674,115675 2d4zA 250 58.54 d.37.1.1,d.37.1.1 131260,131261 1yqgA 263 59.98 1u8bA 133 60.18 1fx7A 230 60.42 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1s50A 259 62.21 c.94.1.1 118864 3bddA 142 63.68 1eyeA 280 64.26 c.1.21.1 29672 1z9hA 290 64.33 a.45.1.1,c.47.1.5 124758,124759 1uz5A 402 64.84 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1mkmA 249 65.38 a.4.5.33,d.110.2.2 79242,79243 2ebyA 113 68.01 1oywA 523 68.59 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1g8lA 411 68.68 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2de3A 365 68.82 2imsA 171 69.35 1xm9A 457 69.36 a.118.1.24 122142 2pgd 482 70.09 1px5A 349 71.39 a.160.1.2,d.218.1.6 95277,95278 2j0pA 345 71.71 e.62.1.1 137903 1resA 43 72.17 a.4.1.2 16023 2on5A 206 72.55 2pzzA 147 72.82 2graA 277 73.23 1k0dA 260 73.59 a.45.1.1,c.47.1.5 67930,67931 1z91A 147 74.79 a.4.5.28 124736 1vflA 356 74.99 c.1.9.1 120041 1s69A 124 75.09 a.1.1.1 105305 1m48A 133 75.42 a.26.1.2 74443 2rfpA 171 75.81 2c71A 216 76.08 c.6.2.3 130017 1xszA 356 77.67 a.118.3.1,d.129.9.1 116005,116006 3cbuA 214 78.45 1rzsA 61 80.07 a.35.1.2 105139 2blfA 373 80.45 1bw0A 416 81.18 c.67.1.1 34385 1vbjA 281 81.91 1gwuA 309 82.83 a.93.1.1 83351 3ciwA 348 83.14 2e2eA 177 83.72 1r69A 69 83.81 a.35.1.2 17028 2bnmA 198 84.15 a.35.1.3,b.82.1.10 128835,128836 1jyeA 349 84.47 c.93.1.1 67455 2cro 71 86.05 2j07A 420 87.34 a.99.1.1,c.28.1.1 137891,137892 1lmb3 92 87.67 1vh0A 161 87.85 c.116.1.3 100626 2r1jL 68 88.21