# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 9.13e-24 a.4.1.9,a.121.1.1 100720,100721 2pbxA 203 1.15e-23 2uxuA 210 1.48e-23 2ibdA 204 1.54e-23 2hyjA 200 3.31e-23 3ccyA 203 3.66e-23 1t56A 216 4.67e-23 a.4.1.9,a.121.1.1 106428,106429 1rktA 205 8.32e-23 a.4.1.9,a.121.1.1 97623,97624 2qtqA 213 1.05e-22 2g7sA 194 1.37e-22 a.4.1.9,a.121.1.1 134737,134738 3bhqA 211 1.50e-22 1qvtA 194 1.55e-22 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 1.60e-22 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 1.64e-22 a.4.1.9,a.121.1.1 88017,88018 2genA 197 1.90e-22 a.4.1.9,a.121.1.1 135062,135063 2f07A 197 2.06e-22 3bcgA 215 2.15e-22 2rasA 212 2.24e-22 3cdlA 203 2.47e-22 3c2bA 221 3.51e-22 2fq4A 192 3.58e-22 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 3.68e-22 a.4.1.9,a.121.1.1 125194,125195 3bruA 222 3.80e-22 1z77A 200 3.86e-22 a.4.1.9,a.121.1.1 124588,124589 1ui5A 215 4.18e-22 a.4.1.9,a.121.1.1 107856,107857 2raeA 207 4.81e-22 3cjdA 198 5.49e-22 2id6A 202 7.19e-22 2qcoA 210 7.61e-22 3cwrA 208 8.40e-22 3crjA 199 8.64e-22 2iekA 200 9.44e-22 2dg7A 195 9.92e-22 2nx4A 194 1.39e-21 2gfnA 209 1.41e-21 a.4.1.9,a.121.1.1 135101,135102 2zb9A 214 1.99e-21 2qkoA 215 2.84e-21 2o7tA 199 3.06e-21 2hytA 197 3.39e-21 2iaiA 230 3.84e-21 2zcmA 192 5.24e-21 2jj7A 186 1.09e-20 1sgmA 191 1.34e-20 a.4.1.9,a.121.1.1 105537,105538 2qibA 231 1.41e-20 2tct 207 1.99e-20 3b81A 203 2.50e-20 2id3A 225 2.68e-20 a.4.1.9,a.121.1.1 137261,137262 2o7oA 207 3.06e-20 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 3.19e-20 a.4.1.9,a.121.1.1 131313,131314 2fbqA 235 3.64e-20 a.4.1.9,a.121.1.1 133256,133257 2i10A 202 4.52e-20 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 4.98e-20 a.4.1.9,a.121.1.1 134558,134559 2optA 234 5.60e-20 1zk8A 183 5.99e-20 a.4.1.9,a.121.1.1 125177,125178 2of7A 260 8.30e-20 2np5A 203 1.32e-19 a.4.1.9,a.121.1.1 138424,138425 2rekA 199 1.38e-19 3bqyA 209 1.39e-19 3bjbA 207 1.43e-19 3colA 196 1.76e-19 3bniA 229 1.85e-19 2fx0A 201 1.97e-19 a.4.1.9,a.121.1.1 134269,134270 2iu5A 195 2.62e-19 2hkuA 215 2.92e-19 2fd5A 180 3.27e-19 a.4.1.9,a.121.1.1 133291,133292 1a6i 217 4.93e-19 2g7gA 213 5.20e-19 a.4.1.9,a.121.1.1 134732,134733 2q24A 194 6.36e-19 2oerA 214 6.70e-19 2vprA 207 8.99e-19 2oi8A 216 9.04e-19 1z0xA 220 1.90e-18 a.4.1.9,a.121.1.1 124334,124335 2guhA 214 2.39e-18 2dg8A 193 2.58e-18 2yveA 185 4.67e-18 2hxoA 237 6.15e-18 1v7bA 185 7.30e-18 a.4.1.9,a.121.1.1 119861,119862 2eh3A 179 7.49e-18 2qwtA 196 8.09e-18 1t33A 224 7.78e-17 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 4.73e-16 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 1.021 1hlvA 131 1.688 a.4.1.7,a.4.1.7 65854,65855 2rn7A 108 1.804 1bl0A 129 2.041 a.4.1.8,a.4.1.8 16053,16054 2v9vA 135 2.108 2qq9A 226 3.590 1zy9A 564 3.636 b.30.5.11,c.1.8.13 125813,125814 2ev0A 142 3.718 a.4.5.24,a.76.1.1 132413,132414 3co4A 312 4.387 2pzzA 147 5.425 2gsqA 202 7.010 a.45.1.1,c.47.1.5 17715,33009 2dt5A 211 7.967 a.4.5.38,c.2.1.12 131708,131709 1wsuA 124 9.136 a.4.5.35,a.4.5.35 121245,121246 2ftsA 419 9.234 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1ijbA 202 11.93 c.62.1.1 71229 2v1xA 591 12.29 1nhyA 219 14.58 a.45.1.1,c.47.1.5 80520,80521 1x9fB 145 14.64 a.1.1.2 114984 2pg4A 95 16.07 1xcbA 211 17.55 a.4.5.38,c.2.1.12 109552,109553 1on2A 142 18.63 a.4.5.24,a.76.1.1 87103,87104 1sfxA 109 20.43 a.4.5.50 105505 2ahrA 259 24.36 a.100.1.10,c.2.1.6 126775,126776 1z9hA 290 24.72 a.45.1.1,c.47.1.5 124758,124759 1js1X 324 27.59 c.78.1.1,c.78.1.1 71834,71835 1oe8A 211 28.01 a.45.1.1,c.47.1.5 86905,86906 1xsvA 113 28.44 a.4.13.3 116003 2rfpA 171 30.12 2pbyA 308 30.37 1tu7A 208 30.94 a.45.1.1,c.47.1.5 112653,112654 1mf7A 194 33.61 c.62.1.1 84937 1atzA 189 35.20 c.62.1.1 34132 1qv1A 195 35.62 a.39.1.5 96347 2d4zA 250 37.40 d.37.1.1,d.37.1.1 131260,131261 2fliA 220 37.59 c.1.2.2 133714 2dtrA 226 37.77 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2fnaA 357 38.36 a.4.5.11,c.37.1.20 133809,133810 1resA 43 38.38 a.4.1.2 16023 1ny1A 240 39.52 c.6.2.3 86395 1n3yA 198 40.30 c.62.1.1 79976 1zcaA 359 45.92 a.66.1.1,c.37.1.8 124897,124898 2qvwA 756 46.16 2zfoC 147 46.24 1s50A 259 46.26 c.94.1.1 118864 1px5A 349 46.79 a.160.1.2,d.218.1.6 95277,95278 1shuX 182 47.22 c.62.1.1 98882 1tqjA 230 47.55 c.1.2.2 107228 2b8wA 328 47.66 2pbqA 178 47.81 1y9qA 192 48.01 a.35.1.8,b.82.1.15 116592,116593 1xo0A 324 48.64 a.60.9.1,d.163.1.1 115674,115675 1p2xA 159 48.94 a.40.1.1 104062 2dh2A 424 49.04 1n9bA 265 49.63 e.3.1.1 85463 1v2aA 210 50.11 a.45.1.1,c.47.1.5 100263,100264 2h09A 155 50.61 2am1A 454 51.36 1ds1A 324 52.46 b.82.2.2 28127 1a0pA 290 54.09 a.60.9.1,d.163.1.1 18105,42165 1m48A 133 54.85 a.26.1.2 74443 1wd6A 123 55.36 d.58.4.12 114525 2r2dA 276 56.42 1a0cA 438 57.82 c.1.15.3 29529 2r8wA 332 58.94 2j07A 420 59.85 a.99.1.1,c.28.1.1 137891,137892 2vg3A 284 60.07 2c1iA 431 60.34 c.6.2.3,d.341.1.1 129636,129637 1zljA 78 60.36 1vhuA 211 61.29 c.50.1.2 100703 3cc1A 433 62.70 1a0p 290 62.91 1l3lA 234 63.54 a.4.6.2,d.110.5.1 73541,73542 1fseA 74 64.42 a.4.6.2 60000 3ch0A 272 64.56 1bw0A 416 64.62 c.67.1.1 34385 1mkzA 172 64.91 c.57.1.1 84998 2gn0A 342 67.04 2f4mB 61 67.20 a.189.1.1 132931 2rdxA 379 68.28 1fx7A 230 72.21 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1je8A 82 72.42 a.4.6.2 77108 1ji6A 589 72.50 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2a2rA 210 73.43 a.45.1.1,c.47.1.5 126058,126059 2blfA 373 73.80 2ekcA 262 77.87 2v25A 259 77.94 1z5hA 780 78.03 2nszA 129 78.17 a.118.1.14 138560 1jkoC 52 79.00 a.4.1.2 66809 1ouvA 273 80.10 a.118.18.1 93570 1gqnA 252 80.25 c.1.10.1 90514 2gnoA 305 80.59 a.80.1.1,c.37.1.20 135414,135415 2graA 277 83.34 2bkxA 242 84.88 1oktA 211 85.17 a.45.1.1,c.47.1.5 93272,93273 1jftA 340 85.55 a.35.1.5,c.93.1.1 66652,66653 2ictA 94 89.53 2dfwA 396 89.68 1vflA 356 89.71 c.1.9.1 120041