# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 3.13e-23 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 3.29e-23 2uxuA 210 3.60e-23 2pbxA 203 3.80e-23 2hyjA 200 7.85e-23 3ccyA 203 1.02e-22 1rktA 205 1.50e-22 a.4.1.9,a.121.1.1 97623,97624 1t56A 216 1.91e-22 a.4.1.9,a.121.1.1 106428,106429 2qtqA 213 2.01e-22 2g7sA 194 2.82e-22 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 3.17e-22 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 3.53e-22 a.4.1.9,a.121.1.1 67247,67248 1pb6A 212 3.69e-22 a.4.1.9,a.121.1.1 88017,88018 2f07A 197 3.82e-22 3bhqA 211 4.24e-22 2genA 197 4.30e-22 a.4.1.9,a.121.1.1 135062,135063 3cdlA 203 5.28e-22 3c2bA 221 5.74e-22 3bruA 222 6.52e-22 1ui5A 215 6.67e-22 a.4.1.9,a.121.1.1 107856,107857 1zkgA 212 6.88e-22 a.4.1.9,a.121.1.1 125194,125195 2rasA 212 6.91e-22 3bcgA 215 6.95e-22 1z77A 200 7.76e-22 a.4.1.9,a.121.1.1 124588,124589 2raeA 207 1.05e-21 2fq4A 192 1.14e-21 a.4.1.9,a.121.1.1 133937,133938 2qcoA 210 1.58e-21 2id6A 202 1.59e-21 3crjA 199 1.60e-21 3cjdA 198 1.67e-21 2gfnA 209 1.87e-21 a.4.1.9,a.121.1.1 135101,135102 3cwrA 208 1.90e-21 2iekA 200 2.01e-21 2zb9A 214 2.68e-21 2nx4A 194 3.46e-21 2hytA 197 6.72e-21 2iaiA 230 7.19e-21 2dg7A 195 8.32e-21 2zcmA 192 8.88e-21 2qkoA 215 1.17e-20 2o7tA 199 1.21e-20 2jj7A 186 1.62e-20 3b81A 203 2.59e-20 1sgmA 191 2.67e-20 a.4.1.9,a.121.1.1 105537,105538 2id3A 225 3.24e-20 a.4.1.9,a.121.1.1 137261,137262 2d6yA 202 3.88e-20 a.4.1.9,a.121.1.1 131313,131314 2qibA 231 4.48e-20 2tct 207 4.57e-20 2g3bA 208 6.79e-20 a.4.1.9,a.121.1.1 134558,134559 2i10A 202 7.22e-20 a.4.1.9,a.121.1.1 136960,136961 2o7oA 207 8.56e-20 a.4.1.9,a.121.1.1 138930,138931 2optA 234 1.15e-19 1zk8A 183 1.31e-19 a.4.1.9,a.121.1.1 125177,125178 2fbqA 235 1.39e-19 a.4.1.9,a.121.1.1 133256,133257 2rekA 199 2.02e-19 2fx0A 201 2.03e-19 a.4.1.9,a.121.1.1 134269,134270 3bqyA 209 2.06e-19 2np5A 203 2.71e-19 a.4.1.9,a.121.1.1 138424,138425 3bjbA 207 2.87e-19 3bniA 229 2.88e-19 2hkuA 215 3.37e-19 2of7A 260 3.66e-19 3colA 196 3.92e-19 2q24A 194 6.99e-19 2fd5A 180 7.14e-19 a.4.1.9,a.121.1.1 133291,133292 2g7gA 213 8.18e-19 a.4.1.9,a.121.1.1 134732,134733 2iu5A 195 9.33e-19 1a6i 217 1.18e-18 2oi8A 216 1.30e-18 2vprA 207 1.38e-18 2oerA 214 1.52e-18 1z0xA 220 2.90e-18 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 4.20e-18 2guhA 214 7.46e-18 2qwtA 196 8.36e-18 2eh3A 179 1.10e-17 2yveA 185 1.10e-17 2hxoA 237 1.10e-17 1v7bA 185 2.22e-17 a.4.1.9,a.121.1.1 119861,119862 1t33A 224 6.96e-17 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 8.66e-16 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.4252 1hlvA 131 0.5877 a.4.1.7,a.4.1.7 65854,65855 2rn7A 108 1.013 2ev0A 142 1.500 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.796 a.4.5.38,c.2.1.12 131708,131709 2v9vA 135 2.214 1wsuA 124 2.462 a.4.5.35,a.4.5.35 121245,121246 1bl0A 129 3.314 a.4.1.8,a.4.1.8 16053,16054 2qq9A 226 3.604 1xcbA 211 4.770 a.4.5.38,c.2.1.12 109552,109553 2pg4A 95 5.718 2gsqA 202 5.957 a.45.1.1,c.47.1.5 17715,33009 2ftsA 419 6.101 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2ahrA 259 8.461 a.100.1.10,c.2.1.6 126775,126776 1xsvA 113 9.233 a.4.13.3 116003 1sfxA 109 10.16 a.4.5.50 105505 1on2A 142 12.10 a.4.5.24,a.76.1.1 87103,87104 3co4A 312 13.14 2j07A 420 13.61 a.99.1.1,c.28.1.1 137891,137892 1a0pA 290 14.52 a.60.9.1,d.163.1.1 18105,42165 1x9fB 145 16.59 a.1.1.2 114984 1zljA 78 16.90 2zfoC 147 17.34 1zcaA 359 18.87 a.66.1.1,c.37.1.8 124897,124898 1l3lA 234 19.40 a.4.6.2,d.110.5.1 73541,73542 1fseA 74 20.16 a.4.6.2 60000 1y9qA 192 20.89 a.35.1.8,b.82.1.15 116592,116593 2graA 277 21.13 1je8A 82 21.36 a.4.6.2 77108 1tu7A 208 22.27 a.45.1.1,c.47.1.5 112653,112654 2fnaA 357 23.14 a.4.5.11,c.37.1.20 133809,133810 1a0p 290 23.88 1nhyA 219 24.38 a.45.1.1,c.47.1.5 80520,80521 2vg3A 284 24.75 1oe8A 211 25.35 a.45.1.1,c.47.1.5 86905,86906 1xo0A 324 25.64 a.60.9.1,d.163.1.1 115674,115675 1xdyA 298 26.21 d.176.1.1 115186 2blfA 373 26.85 2ictA 94 27.47 2h09A 155 27.69 2nszA 129 27.86 a.118.1.14 138560 1y7yA 74 28.77 a.35.1.3 122729 2a2rA 210 31.57 a.45.1.1,c.47.1.5 126058,126059 2izzA 322 32.12 1b0nA 111 32.98 a.34.1.1,a.35.1.3 17001,17064 2ondA 308 33.61 1jkoC 52 33.87 a.4.1.2 66809 1resA 43 34.13 a.4.1.2 16023 2bnmA 198 34.23 a.35.1.3,b.82.1.10 128835,128836 1zy9A 564 35.54 b.30.5.11,c.1.8.13 125813,125814 1z5hA 780 38.59 1yqgA 263 39.03 2v1xA 591 39.19 1lbkA 208 39.47 a.45.1.1,c.47.1.5 73809,73810 1ijbA 202 40.35 c.62.1.1 71229 1u8bA 133 41.07 2iw1A 374 43.41 c.87.1.8 137738 2ifuA 307 43.54 1js3A 486 44.07 c.67.1.6 67215 2dh2A 424 44.61 1utxA 66 45.87 a.35.1.3 108034 1kz7A 353 45.89 a.87.1.1,b.55.1.1 73333,73334 1sedA 117 45.96 a.219.1.1 105449 1lmb3 92 46.19 1z9hA 290 47.60 a.45.1.1,c.47.1.5 124758,124759 2rcyA 262 48.85 1rzsA 61 52.22 a.35.1.2 105139 1pgtA 210 52.60 a.45.1.1,c.47.1.5 17515,32809 2rfpA 171 53.08 1bw0A 416 53.93 c.67.1.1 34385 2b5aA 77 56.10 a.35.1.3 127882 2d4zA 250 57.86 d.37.1.1,d.37.1.1 131260,131261 1ouvA 273 59.25 a.118.18.1 93570 1px5A 349 59.77 a.160.1.2,d.218.1.6 95277,95278 1p2xA 159 61.51 a.40.1.1 104062 3b7hA 78 61.85 1lrv 244 63.18 2q4uA 272 63.28 2zfoA 140 65.00 1qv1A 195 65.13 a.39.1.5 96347 2nrlA 147 67.08 3cloA 258 68.60 1wa5B 530 68.63 a.118.1.1 114432 2ebyA 113 70.23 1yuzA 202 70.61 a.25.1.1,g.41.5.1 124077,124078 1oywA 523 71.46 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 2qwwA 154 71.71 1s69A 124 72.96 a.1.1.1 105305 2nyxA 168 73.03 2o09A 189 73.31 1oktA 211 75.43 a.45.1.1,c.47.1.5 93272,93273 2je8A 848 75.55 2aexA 346 75.67 1i2kA 269 77.64 e.17.1.1 90661 2d2mC 147 77.85 2dnxA 130 78.08 2rdxA 379 79.41 1v2aA 210 79.59 a.45.1.1,c.47.1.5 100263,100264 2b8wA 328 79.92 2dtrA 226 80.46 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 3cgvA 397 80.95 1g7oA 215 81.15 a.45.1.1,c.47.1.5 60332,60333 1m48A 133 81.35 a.26.1.2 74443 1fx7A 230 81.93 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1wd6A 123 83.88 d.58.4.12 114525 3bj6A 152 84.58 1s3jA 155 87.45 a.4.5.28 98437 1k3yA 221 88.66 a.45.1.1,c.47.1.5 77245,77246 2ethA 154 88.95 a.4.5.28 132358 2pbyA 308 89.27 1mkmA 249 89.42 a.4.5.33,d.110.2.2 79242,79243 3be4A 217 89.82