# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 5.74e-23 1vi0A 206 7.58e-23 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 8.84e-23 2ibdA 204 9.18e-23 2hyjA 200 1.63e-22 2qtqA 213 2.58e-22 1t56A 216 3.20e-22 a.4.1.9,a.121.1.1 106428,106429 3ccyA 203 3.49e-22 1rktA 205 3.76e-22 a.4.1.9,a.121.1.1 97623,97624 2g7sA 194 5.14e-22 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 6.34e-22 a.4.1.9,a.121.1.1 104602,104603 1jt6A 188 6.75e-22 a.4.1.9,a.121.1.1 67247,67248 3bhqA 211 6.92e-22 2genA 197 8.47e-22 a.4.1.9,a.121.1.1 135062,135063 2f07A 197 8.90e-22 1pb6A 212 9.83e-22 a.4.1.9,a.121.1.1 88017,88018 3bruA 222 1.07e-21 1zkgA 212 1.33e-21 a.4.1.9,a.121.1.1 125194,125195 3c2bA 221 1.45e-21 3cdlA 203 1.64e-21 1ui5A 215 1.65e-21 a.4.1.9,a.121.1.1 107856,107857 2rasA 212 1.83e-21 3bcgA 215 2.11e-21 1z77A 200 2.19e-21 a.4.1.9,a.121.1.1 124588,124589 2fq4A 192 2.27e-21 a.4.1.9,a.121.1.1 133937,133938 2raeA 207 2.58e-21 2id6A 202 3.04e-21 3crjA 199 3.13e-21 2iekA 200 3.18e-21 3cjdA 198 4.70e-21 3cwrA 208 5.24e-21 2gfnA 209 5.78e-21 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 7.19e-21 2zb9A 214 7.50e-21 2dg7A 195 9.20e-21 2qcoA 210 1.13e-20 2o7tA 199 1.29e-20 2zcmA 192 1.71e-20 2hytA 197 1.79e-20 2qkoA 215 2.21e-20 2iaiA 230 2.32e-20 2qibA 231 3.54e-20 2jj7A 186 3.77e-20 3b81A 203 6.09e-20 1sgmA 191 6.24e-20 a.4.1.9,a.121.1.1 105537,105538 2tct 207 8.11e-20 2g3bA 208 8.87e-20 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 8.94e-20 a.4.1.9,a.121.1.1 138930,138931 2id3A 225 9.13e-20 a.4.1.9,a.121.1.1 137261,137262 2i10A 202 1.09e-19 a.4.1.9,a.121.1.1 136960,136961 2d6yA 202 1.40e-19 a.4.1.9,a.121.1.1 131313,131314 2optA 234 1.80e-19 1zk8A 183 1.81e-19 a.4.1.9,a.121.1.1 125177,125178 2fbqA 235 2.05e-19 a.4.1.9,a.121.1.1 133256,133257 2np5A 203 3.48e-19 a.4.1.9,a.121.1.1 138424,138425 3bniA 229 3.84e-19 2rekA 199 3.89e-19 2of7A 260 4.91e-19 3bjbA 207 5.63e-19 2fx0A 201 5.69e-19 a.4.1.9,a.121.1.1 134269,134270 2hkuA 215 5.88e-19 3colA 196 6.09e-19 3bqyA 209 6.49e-19 2g7gA 213 8.15e-19 a.4.1.9,a.121.1.1 134732,134733 2iu5A 195 1.03e-18 2fd5A 180 1.12e-18 a.4.1.9,a.121.1.1 133291,133292 2q24A 194 1.16e-18 1a6i 217 1.46e-18 2oerA 214 2.12e-18 2oi8A 216 2.22e-18 2vprA 207 2.88e-18 1z0xA 220 3.14e-18 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 4.72e-18 2yveA 185 9.90e-18 2guhA 214 1.00e-17 2eh3A 179 1.53e-17 2qwtA 196 1.68e-17 1v7bA 185 2.45e-17 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 2.82e-17 1t33A 224 1.06e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 8.60e-16 a.4.1.9,a.121.1.1 134734,134735 2jn6A 97 0.2694 1hlvA 131 0.5481 a.4.1.7,a.4.1.7 65854,65855 2rn7A 108 1.026 2ev0A 142 1.053 a.4.5.24,a.76.1.1 132413,132414 2dt5A 211 1.307 a.4.5.38,c.2.1.12 131708,131709 2v9vA 135 1.564 2qq9A 226 2.017 1bl0A 129 2.923 a.4.1.8,a.4.1.8 16053,16054 1wsuA 124 3.140 a.4.5.35,a.4.5.35 121245,121246 1xcbA 211 3.770 a.4.5.38,c.2.1.12 109552,109553 1xsvA 113 4.587 a.4.13.3 116003 2pg4A 95 4.903 1sfxA 109 6.984 a.4.5.50 105505 1zy9A 564 7.495 b.30.5.11,c.1.8.13 125813,125814 1x9fB 145 9.758 a.1.1.2 114984 2ahrA 259 9.938 a.100.1.10,c.2.1.6 126775,126776 2zfoC 147 10.57 2v1xA 591 12.47 2ftsA 419 12.82 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 1resA 43 13.23 a.4.1.2 16023 2gsqA 202 13.46 a.45.1.1,c.47.1.5 17715,33009 1nhyA 219 13.95 a.45.1.1,c.47.1.5 80520,80521 3co4A 312 14.14 1zljA 78 15.62 1on2A 142 15.74 a.4.5.24,a.76.1.1 87103,87104 1y9qA 192 16.17 a.35.1.8,b.82.1.15 116592,116593 1a0pA 290 16.66 a.60.9.1,d.163.1.1 18105,42165 1l3lA 234 17.50 a.4.6.2,d.110.5.1 73541,73542 1fseA 74 18.87 a.4.6.2 60000 1y7yA 74 20.27 a.35.1.3 122729 2fnaA 357 20.64 a.4.5.11,c.37.1.20 133809,133810 1je8A 82 21.13 a.4.6.2 77108 1z5hA 780 21.77 2ondA 308 22.00 1zcaA 359 25.42 a.66.1.1,c.37.1.8 124897,124898 1a0p 290 25.96 1b0nA 111 26.16 a.34.1.1,a.35.1.3 17001,17064 2ictA 94 28.14 1jkoC 52 30.84 a.4.1.2 66809 1rzsA 61 30.89 a.35.1.2 105139 1oywA 523 31.05 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1xo0A 324 31.95 a.60.9.1,d.163.1.1 115674,115675 2izzA 322 33.06 1tu7A 208 33.67 a.45.1.1,c.47.1.5 112653,112654 1u8bA 133 33.78 2j07A 420 34.02 a.99.1.1,c.28.1.1 137891,137892 1ijbA 202 35.38 c.62.1.1 71229 1m48A 133 36.00 a.26.1.2 74443 2graA 277 36.10 2bnmA 198 37.34 a.35.1.3,b.82.1.10 128835,128836 1wd6A 123 37.44 d.58.4.12 114525 1oe8A 211 38.15 a.45.1.1,c.47.1.5 86905,86906 2ebyA 113 38.63 1yqgA 263 40.25 2zfoA 140 41.63 1gqnA 252 42.62 c.1.10.1 90514 2h09A 155 43.43 2dtrA 226 45.21 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1utxA 66 45.96 a.35.1.3 108034 2vg3A 284 46.58 1wa5B 530 51.58 a.118.1.1 114432 3b7hA 78 52.80 1y89A 238 52.93 2dh2A 424 54.05 2rcyA 262 54.20 1s69A 124 54.35 a.1.1.1 105305 2qwwA 154 55.00 1s3jA 155 55.20 a.4.5.28 98437 1adrA 76 57.67 a.35.1.2 17042 2pvuA 272 58.96 2o8xA 70 59.02 1z9hA 290 59.17 a.45.1.1,c.47.1.5 124758,124759 1v2aA 210 59.27 a.45.1.1,c.47.1.5 100263,100264 1js3A 486 59.31 c.67.1.6 67215 3cloA 258 59.39 2dfwA 396 59.49 1lrv 244 60.35 1px5A 349 60.49 a.160.1.2,d.218.1.6 95277,95278 2nyxA 168 61.01 1lrvA 244 61.51 a.118.1.5 19146 2b5aA 77 61.67 a.35.1.3 127882 2nszA 129 63.70 a.118.1.14 138560 1mkmA 249 64.10 a.4.5.33,d.110.2.2 79242,79243 2blfA 373 65.80 2a2rA 210 66.19 a.45.1.1,c.47.1.5 126058,126059 2o1mA 258 67.18 1a5tA 334 67.79 a.80.1.1,c.37.1.20 18450,32423 2de3A 365 68.85 2r8wA 332 71.01 2hiqA 113 73.06 d.58.4.12 136529 1x9fA 151 74.08 a.1.1.2 114983 2ia2A 265 74.64 1aj2A 282 74.91 c.1.21.1 29665 1xqsA 280 75.05 a.118.1.21 122243 1neqA 74 76.41 a.35.1.2 17063 2pbyA 308 76.50 2zfdA 226 76.52 2f4mB 61 76.62 a.189.1.1 132931 2ifuA 307 78.25 1wdcB 156 79.13 a.39.1.5 17302 1sedA 117 80.45 a.219.1.1 105449 2gdrA 202 81.84 2a5sA 284 82.86 c.94.1.1 126178 2ieeA 271 82.88 1i2kA 269 83.48 e.17.1.1 90661 2d4zA 250 84.25 d.37.1.1,d.37.1.1 131260,131261 2g7uA 257 85.09 2r1jL 68 86.81 2ofyA 86 87.30 1lmb3 92 87.86 2dnxA 130 88.20 1fx7A 230 89.08 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2ethA 154 89.10 a.4.5.28 132358 2nvoA 535 89.83 2v25A 259 89.86