# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2uxuA 210 1.02e-21 2hyjA 200 7.87e-21 2pbxA 203 1.13e-20 1vi0A 206 1.27e-20 a.4.1.9,a.121.1.1 100720,100721 2qtqA 213 1.35e-20 3bcgA 215 1.58e-20 1t56A 216 1.87e-20 a.4.1.9,a.121.1.1 106428,106429 2ibdA 204 2.14e-20 2g7sA 194 2.76e-20 a.4.1.9,a.121.1.1 134737,134738 3bhqA 211 4.01e-20 3ccyA 203 5.96e-20 1pb6A 212 6.30e-20 a.4.1.9,a.121.1.1 88017,88018 3cdlA 203 6.50e-20 2f07A 197 7.09e-20 1rktA 205 7.37e-20 a.4.1.9,a.121.1.1 97623,97624 2fq4A 192 7.52e-20 a.4.1.9,a.121.1.1 133937,133938 2genA 197 7.70e-20 a.4.1.9,a.121.1.1 135062,135063 1ui5A 215 9.44e-20 a.4.1.9,a.121.1.1 107856,107857 3bruA 222 1.17e-19 2rasA 212 1.24e-19 3crjA 199 1.27e-19 2gfnA 209 1.87e-19 a.4.1.9,a.121.1.1 135101,135102 2raeA 207 2.24e-19 3c2bA 221 2.38e-19 3cwrA 208 2.86e-19 1z77A 200 3.01e-19 a.4.1.9,a.121.1.1 124588,124589 1zkgA 212 3.60e-19 a.4.1.9,a.121.1.1 125194,125195 2nx4A 194 4.10e-19 2dg7A 195 4.33e-19 1qvtA 194 4.34e-19 a.4.1.9,a.121.1.1 104602,104603 2id6A 202 4.99e-19 2qcoA 210 5.70e-19 3cjdA 198 9.11e-19 1jt6A 188 1.05e-18 a.4.1.9,a.121.1.1 67247,67248 2jj7A 186 1.16e-18 2id3A 225 1.18e-18 a.4.1.9,a.121.1.1 137261,137262 2iekA 200 1.36e-18 2hytA 197 1.44e-18 2iaiA 230 2.00e-18 2zb9A 214 2.57e-18 2qibA 231 3.20e-18 1sgmA 191 3.20e-18 a.4.1.9,a.121.1.1 105537,105538 3b81A 203 4.61e-18 2o7tA 199 8.25e-18 2of7A 260 1.09e-17 2qkoA 215 1.15e-17 2i10A 202 1.21e-17 a.4.1.9,a.121.1.1 136960,136961 2fx0A 201 1.33e-17 a.4.1.9,a.121.1.1 134269,134270 2np5A 203 1.57e-17 a.4.1.9,a.121.1.1 138424,138425 2fbqA 235 1.58e-17 a.4.1.9,a.121.1.1 133256,133257 2g3bA 208 2.12e-17 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 2.20e-17 a.4.1.9,a.121.1.1 131313,131314 3colA 196 3.95e-17 2fd5A 180 5.44e-17 a.4.1.9,a.121.1.1 133291,133292 1zk8A 183 7.85e-17 a.4.1.9,a.121.1.1 125177,125178 2zcmA 192 8.02e-17 2o7oA 207 8.04e-17 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 9.18e-17 2tct 207 9.33e-17 2hkuA 215 9.36e-17 2rekA 199 1.08e-16 2vprA 207 1.11e-16 2optA 234 1.14e-16 3bniA 229 1.64e-16 2qwtA 196 1.94e-16 2oerA 214 2.10e-16 2q24A 194 2.20e-16 3bjbA 207 3.09e-16 3bqyA 209 3.57e-16 2guhA 214 5.10e-16 1z0xA 220 7.42e-16 a.4.1.9,a.121.1.1 124334,124335 2iu5A 195 8.81e-16 2oi8A 216 8.95e-16 2dg8A 193 2.40e-15 1t33A 224 3.44e-15 a.4.1.9,a.121.1.1 106295,106296 2hxoA 237 3.79e-15 2eh3A 179 4.29e-15 2g7gA 213 4.35e-15 a.4.1.9,a.121.1.1 134732,134733 1v7bA 185 1.35e-14 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 1.58e-14 2g7lA 243 1.34e-13 a.4.1.9,a.121.1.1 134734,134735 1ji6A 589 3.468 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1ciyA 590 6.385 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1bupA 386 6.950 c.55.1.1,c.55.1.1 33377,33378 1i5pA 633 8.419 b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2v9vA 135 9.200 2imhA 231 9.850 1tu7A 208 9.921 a.45.1.1,c.47.1.5 112653,112654 2gsoA 393 12.74 2gsqA 202 13.28 a.45.1.1,c.47.1.5 17715,33009 1jlvA 209 19.07 a.45.1.1,c.47.1.5 71729,71730 2ifuA 307 19.11 2imiA 221 22.39 1pgtA 210 22.57 a.45.1.1,c.47.1.5 17515,32809 2ieeA 271 24.42 2jn6A 97 24.65 1v2aA 210 32.45 a.45.1.1,c.47.1.5 100263,100264 2qq9A 226 32.85 2a2rA 210 34.30 a.45.1.1,c.47.1.5 126058,126059 2d93A 134 36.44 1j1jA 240 37.03 a.118.16.1 90762 1lbkA 208 37.33 a.45.1.1,c.47.1.5 73809,73810 1z9hA 290 38.03 a.45.1.1,c.47.1.5 124758,124759 2c3nA 247 38.26 2napA 723 40.25 b.52.2.2,c.81.1.1 26926,35334 2pbqA 178 41.02 2gn4A 344 41.35 2cw8A 537 43.56 2rn7A 108 45.27 1mkzA 172 46.99 c.57.1.1 84998 1rh9A 373 47.27 c.1.8.3 118773 1hn0A 1021 48.56 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 2a2jA 246 48.69 b.45.1.1 126033 1ci0A 228 49.61 b.45.1.1 25750 17gsA 210 50.33 a.45.1.1,c.47.1.5 17524,32818 3cbuA 214 50.93 1odzA 386 52.32 c.1.8.3 86889 1ag9A 175 53.90 c.23.5.1 31178 1zcaA 359 56.86 a.66.1.1,c.37.1.8 124897,124898 2e2wA 113 57.35 1rhs 296 57.50 1tz9A 367 58.64 c.1.15.6 107466 1vf1A 229 59.19 2qxlA 658 59.51 1m6yA 301 61.88 a.60.13.1,c.66.1.23 78716,78717 1m0uA 249 62.03 a.45.1.1,c.47.1.5 78359,78360 2o1mA 258 62.10 2oxoA 103 63.94 1xcbA 211 64.01 a.4.5.38,c.2.1.12 109552,109553 1dlcA 584 64.47 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2aqjA 538 64.50 1w9pA 433 66.10 c.1.8.5,d.26.3.1 114412,114413 2qkmB 266 66.39 2e7zA 727 68.11 1dkiA 371 68.71 d.3.1.1 37090 1k3yA 221 70.06 a.45.1.1,c.47.1.5 77245,77246 1a0dA 440 70.25 c.1.15.3 29533 2yzvA 303 70.51 1w77A 228 71.02 c.68.1.13 120679 2is8A 164 74.10 1giqA 413 74.97 d.166.1.1,d.166.1.1 76224,76225 1k8kA 418 75.46 c.55.1.1,c.55.1.1 68305,68306 1uuqA 440 76.08 c.1.8.3 100015 1bl0A 129 77.43 a.4.1.8,a.4.1.8 16053,16054 1qnrA 344 79.74 c.1.8.3 28834 1xjdA 345 80.15 d.144.1.7 115388 2r4gA 267 81.97 2pmbA 462 82.53 1y5eA 169 84.73 c.57.1.1 122632 1xi9A 406 87.32 c.67.1.1 115355