# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 1.95e-22 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 2.01e-22 2pbxA 203 4.53e-22 2ibdA 204 4.64e-22 1t56A 216 8.74e-22 a.4.1.9,a.121.1.1 106428,106429 2hyjA 200 8.85e-22 3ccyA 203 8.94e-22 2qtqA 213 1.06e-21 3bhqA 211 1.84e-21 3bcgA 215 2.17e-21 2g7sA 194 2.20e-21 a.4.1.9,a.121.1.1 134737,134738 2rasA 212 2.49e-21 1pb6A 212 2.59e-21 a.4.1.9,a.121.1.1 88017,88018 2f07A 197 2.73e-21 1rktA 205 3.04e-21 a.4.1.9,a.121.1.1 97623,97624 2raeA 207 3.13e-21 2genA 197 3.20e-21 a.4.1.9,a.121.1.1 135062,135063 3cdlA 203 3.67e-21 1qvtA 194 4.40e-21 a.4.1.9,a.121.1.1 104602,104603 3crjA 199 5.28e-21 3bruA 222 6.07e-21 2dg7A 195 6.44e-21 1jt6A 188 6.57e-21 a.4.1.9,a.121.1.1 67247,67248 2gfnA 209 7.76e-21 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 8.31e-21 1zkgA 212 9.25e-21 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 1.07e-20 a.4.1.9,a.121.1.1 124588,124589 2fq4A 192 1.18e-20 a.4.1.9,a.121.1.1 133937,133938 3cwrA 208 1.40e-20 2id6A 202 1.44e-20 3cjdA 198 1.47e-20 2qcoA 210 1.60e-20 2iekA 200 2.49e-20 1ui5A 215 3.58e-20 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 4.09e-20 3c2bA 221 4.78e-20 2iaiA 230 5.09e-20 2zb9A 214 6.79e-20 2qkoA 215 9.68e-20 2jj7A 186 1.03e-19 1sgmA 191 1.74e-19 a.4.1.9,a.121.1.1 105537,105538 2hytA 197 1.91e-19 2id3A 225 2.05e-19 a.4.1.9,a.121.1.1 137261,137262 2d6yA 202 2.65e-19 a.4.1.9,a.121.1.1 131313,131314 2g3bA 208 2.75e-19 a.4.1.9,a.121.1.1 134558,134559 2zcmA 192 5.11e-19 2of7A 260 6.10e-19 2np5A 203 7.45e-19 a.4.1.9,a.121.1.1 138424,138425 2qibA 231 9.42e-19 2i10A 202 1.13e-18 a.4.1.9,a.121.1.1 136960,136961 3b81A 203 1.19e-18 3bniA 229 1.47e-18 2fd5A 180 1.61e-18 a.4.1.9,a.121.1.1 133291,133292 3colA 196 1.84e-18 2fx0A 201 1.90e-18 a.4.1.9,a.121.1.1 134269,134270 2rekA 199 2.49e-18 3bjbA 207 2.78e-18 2fbqA 235 3.29e-18 a.4.1.9,a.121.1.1 133256,133257 2q24A 194 3.86e-18 2hkuA 215 5.09e-18 2optA 234 5.32e-18 1zk8A 183 5.60e-18 a.4.1.9,a.121.1.1 125177,125178 3bqyA 209 5.96e-18 2o7oA 207 6.16e-18 a.4.1.9,a.121.1.1 138930,138931 2tct 207 8.06e-18 2oerA 214 8.18e-18 2oi8A 216 1.21e-17 1a6i 217 1.33e-17 2qwtA 196 1.39e-17 2iu5A 195 1.47e-17 2vprA 207 1.82e-17 2guhA 214 1.89e-17 1z0xA 220 2.56e-17 a.4.1.9,a.121.1.1 124334,124335 2dg8A 193 6.26e-17 2yveA 185 1.39e-16 1v7bA 185 1.92e-16 a.4.1.9,a.121.1.1 119861,119862 2eh3A 179 2.22e-16 2g7gA 213 2.77e-16 a.4.1.9,a.121.1.1 134732,134733 2hxoA 237 3.64e-16 1t33A 224 5.17e-16 a.4.1.9,a.121.1.1 106295,106296 2g7lA 243 9.22e-15 a.4.1.9,a.121.1.1 134734,134735 2pzzA 147 0.5462 1z9hA 290 4.129 a.45.1.1,c.47.1.5 124758,124759 2gsqA 202 5.187 a.45.1.1,c.47.1.5 17715,33009 2v9vA 135 5.959 1ji6A 589 5.964 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1tu7A 208 6.064 a.45.1.1,c.47.1.5 112653,112654 1oe8A 211 6.190 a.45.1.1,c.47.1.5 86905,86906 2jn6A 97 7.165 3co4A 312 8.809 2rn7A 108 9.031 1v2aA 210 10.72 a.45.1.1,c.47.1.5 100263,100264 2qq9A 226 12.62 1on2A 142 15.65 a.4.5.24,a.76.1.1 87103,87104 2v1xA 591 17.13 1jlvA 209 17.58 a.45.1.1,c.47.1.5 71729,71730 2q4uA 272 18.11 1hlvA 131 19.99 a.4.1.7,a.4.1.7 65854,65855 1bl0A 129 20.32 a.4.1.8,a.4.1.8 16053,16054 1m0uA 249 22.43 a.45.1.1,c.47.1.5 78359,78360 1xcbA 211 23.58 a.4.5.38,c.2.1.12 109552,109553 1j1jA 240 26.18 a.118.16.1 90762 1lbkA 208 26.83 a.45.1.1,c.47.1.5 73809,73810 1r1dA 247 27.57 c.69.1.29 96813 1fx7A 230 28.69 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 2ev0A 142 29.45 a.4.5.24,a.76.1.1 132413,132414 1h97A 147 33.00 a.1.1.2 60812 1v4aA 440 33.80 a.24.16.4,d.218.1.9 108350,108351 2ondA 308 33.96 2am1A 454 34.89 2qalC 232 35.57 1uyrA 737 35.86 c.14.1.4,c.14.1.4 100188,100189 1jmkC 230 36.56 c.69.1.22 71747 1sfxA 109 37.83 a.4.5.50 105505 2qvwA 756 46.60 2qipA 165 47.82 1x91A 153 48.40 a.29.6.1 114975 1oktA 211 49.56 a.45.1.1,c.47.1.5 93272,93273 2ifuA 307 50.32 1a0p 290 50.42 2a2rA 210 51.64 a.45.1.1,c.47.1.5 126058,126059 2cj4A 150 52.23 a.29.6.1 130518 1mkzA 172 53.52 c.57.1.1 84998 2h09A 155 53.95 2de3A 365 55.38 1dlcA 584 56.24 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2f4mB 61 59.00 a.189.1.1 132931 1ji0A 240 59.19 c.37.1.12 71665 1lnsA 763 59.68 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 3cbuA 214 62.29 1vh0A 161 63.36 c.116.1.3 100626 1bea 127 63.98 2pg4A 95 64.23 1xnfA 275 64.86 a.118.8.1 115580 1pgtA 210 65.07 a.45.1.1,c.47.1.5 17515,32809 2fliA 220 67.17 c.1.2.2 133714 2c3nA 247 68.17 2pbqA 178 68.47 2v1fA 153 69.20 a.1.1.2 140055 1usyA 275 73.11 d.104.1.1 113422 1k3yA 221 75.67 a.45.1.1,c.47.1.5 77245,77246 2nszA 129 77.28 a.118.1.14 138560 2hnlA 225 77.33 2rfgA 297 78.14 2h6bA 250 78.58 2dt5A 211 80.54 a.4.5.38,c.2.1.12 131708,131709 2fukA 220 83.65 1iyhA 198 84.60 a.45.1.1,c.47.1.5 83790,83791 1tqjA 230 87.00 c.1.2.2 107228 1rd5A 262 88.80 c.1.2.4 111772 1m6yA 301 89.15 a.60.13.1,c.66.1.23 78716,78717 1xo0A 324 89.41 a.60.9.1,d.163.1.1 115674,115675 2d2mC 147 89.62 2p7jA 287 89.92