# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ibdA 204 8.31e-14 1t56A 216 9.19e-14 a.4.1.9,a.121.1.1 106428,106429 1vi0A 206 2.26e-13 a.4.1.9,a.121.1.1 100720,100721 2qtqA 213 2.32e-13 3cdlA 203 2.80e-13 2pbxA 203 3.53e-13 2uxuA 210 3.81e-13 2g7sA 194 4.59e-13 a.4.1.9,a.121.1.1 134737,134738 1pb6A 212 9.96e-13 a.4.1.9,a.121.1.1 88017,88018 2hyjA 200 1.25e-12 3bruA 222 1.76e-12 1jt6A 188 2.46e-12 a.4.1.9,a.121.1.1 67247,67248 3crjA 199 5.38e-12 3bhqA 211 5.78e-12 1qvtA 194 6.03e-12 a.4.1.9,a.121.1.1 104602,104603 1z77A 200 7.91e-12 a.4.1.9,a.121.1.1 124588,124589 2jj7A 186 7.91e-12 3ccyA 203 7.97e-12 2id3A 225 8.71e-12 a.4.1.9,a.121.1.1 137261,137262 2f07A 197 1.14e-11 3bcgA 215 2.09e-11 2fq4A 192 2.68e-11 a.4.1.9,a.121.1.1 133937,133938 2id6A 202 3.27e-11 2iaiA 230 3.98e-11 2iekA 200 4.39e-11 1zkgA 212 4.57e-11 a.4.1.9,a.121.1.1 125194,125195 1rktA 205 4.92e-11 a.4.1.9,a.121.1.1 97623,97624 2genA 197 6.10e-11 a.4.1.9,a.121.1.1 135062,135063 3c2bA 221 6.61e-11 3colA 196 7.47e-11 2fx0A 201 8.95e-11 a.4.1.9,a.121.1.1 134269,134270 2nx4A 194 9.17e-11 2zb9A 214 9.29e-11 2g3bA 208 1.43e-10 a.4.1.9,a.121.1.1 134558,134559 2hytA 197 1.99e-10 2hkuA 215 2.29e-10 2o7tA 199 2.89e-10 1zk8A 183 2.92e-10 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 3.15e-10 a.4.1.9,a.121.1.1 136960,136961 3b81A 203 3.22e-10 1ui5A 215 3.85e-10 a.4.1.9,a.121.1.1 107856,107857 2oerA 214 3.88e-10 3cwrA 208 4.00e-10 3cjdA 198 4.48e-10 2rasA 212 6.48e-10 2qibA 231 7.57e-10 2qwtA 196 1.08e-09 2rekA 199 1.55e-09 2q24A 194 1.69e-09 2fbqA 235 1.75e-09 a.4.1.9,a.121.1.1 133256,133257 3bjbA 207 1.87e-09 2qcoA 210 2.88e-09 2zcmA 192 3.47e-09 2dg7A 195 4.13e-09 2eh3A 179 4.96e-09 2np5A 203 5.51e-09 a.4.1.9,a.121.1.1 138424,138425 2guhA 214 5.84e-09 2oi8A 216 6.36e-09 3bniA 229 6.76e-09 1sgmA 191 1.04e-08 a.4.1.9,a.121.1.1 105537,105538 2gfnA 209 1.09e-08 a.4.1.9,a.121.1.1 135101,135102 2of7A 260 1.37e-08 3bqyA 209 1.75e-08 2d6yA 202 1.93e-08 a.4.1.9,a.121.1.1 131313,131314 2o7oA 207 2.00e-08 a.4.1.9,a.121.1.1 138930,138931 1t33A 224 2.34e-08 a.4.1.9,a.121.1.1 106295,106296 2fd5A 180 2.46e-08 a.4.1.9,a.121.1.1 133291,133292 2dg8A 193 2.49e-08 2tct 207 3.18e-08 2optA 234 3.54e-08 2yveA 185 3.60e-08 2g7gA 213 6.47e-08 a.4.1.9,a.121.1.1 134732,134733 2g7lA 243 8.70e-08 a.4.1.9,a.121.1.1 134734,134735 2raeA 207 1.05e-07 2vprA 207 1.09e-07 2iu5A 195 1.61e-07 1v7bA 185 1.77e-07 a.4.1.9,a.121.1.1 119861,119862 1z0xA 220 2.20e-07 a.4.1.9,a.121.1.1 124334,124335 2qkoA 215 2.52e-07 1a6i 217 3.32e-07 2hxoA 237 1.88e-06 2ifuA 307 1.630 2fepA 289 3.934 1jyeA 349 5.814 c.93.1.1 67455 1b3uA 588 7.250 a.118.1.2 19135 1ea5A 537 7.280 c.69.1.1 34592 2pljA 419 7.523 1yzfA 195 7.620 c.23.10.5 124275 1e0tA 470 9.175 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 2pbyA 308 9.458 2d1yA 256 9.700 c.2.1.2 131151 1vbuA 328 9.925 c.1.8.3 119963 1v4aA 440 9.99 a.24.16.4,d.218.1.9 108350,108351 3ctpA 330 10.07 1aisB 200 10.26 a.74.1.2,a.74.1.2 18384,18385 2qulA 290 10.49 3cnyA 301 11.36 2o20A 332 11.56 2ak3A 226 12.86 c.37.1.1,g.41.2.1 31892,45193 1r8sE 203 12.95 a.118.3.1 97248 1yqyA 523 13.70 d.92.1.14,d.166.1.1 123903,123904 1yixA 265 13.88 c.1.9.12 123371 1ad1A 266 14.35 c.1.21.1 29668 2rjoA 332 14.81 1a3wA 500 15.72 b.58.1.1,c.1.12.1,c.49.1.1 27060,29288,33142 1wmaA 276 16.46 c.2.1.2 121042 2vggA 528 17.39 2bwjA 199 18.46 1tq6A 413 18.86 c.37.1.8 107202 2vgbA 528 20.29 1zemA 262 21.33 c.2.1.2 124984 1mkmA 249 22.15 a.4.5.33,d.110.2.2 79242,79243 1zd8A 227 22.91 2q02A 272 23.14 3brqA 296 23.60 2e3zA 465 24.31 2dknA 255 24.44 1px5A 349 24.64 a.160.1.2,d.218.1.6 95277,95278 1nh1A 330 24.99 e.45.1.1 91871 1ku1A 230 25.65 a.118.3.1 72996 3b9qA 302 28.03 2vgiA 528 28.30 2q8xA 331 29.16 1muwA 386 29.59 c.1.15.3 79495 2di3A 239 30.97 1yvrA 538 31.49 a.118.25.1,c.62.1.5 124116,124117 2gzmA 267 32.06 1n00A 321 32.64 a.65.1.1 85241 1yb1A 272 33.00 c.2.1.2 116599 1w2xA 758 33.30 c.14.1.4,c.14.1.4 109134,109135 1fmcA 255 33.66 c.2.1.2 29856 1sh5A 245 34.07 a.40.1.1,a.40.1.1 105543,105544 1p2xA 159 34.89 a.40.1.1 104062 1m3uA 264 36.65 c.1.12.8 84784 2vgfA 528 36.88 1gp6A 356 36.88 b.82.2.1 65441 2pm7A 399 39.17 3c3kA 285 39.39 2cdnA 201 39.74 c.37.1.1 130289 2fiqA 420 40.02 c.1.10.7 133527 1zejA 293 41.51 1eyeA 280 41.70 c.1.21.1 29672 2iksA 293 42.09 1n82A 331 43.32 c.1.8.3 91703 3bblA 287 43.50 1ak2A 233 43.74 c.37.1.1,g.41.2.1 31894,45195 1l5oA 356 44.09 c.39.1.1 77711 1tv9A 335 45.79 a.60.6.1,a.60.12.1,d.218.1.2 112675,112676,112677 1gqnA 252 46.53 c.1.10.1 90514 1x1tA 260 48.39 c.2.1.2 121597 2qghA 425 48.77 2o23A 265 49.32 c.2.1.2 138884 1kdoA 227 49.91 c.37.1.1 68478 1jlwA 219 50.01 a.45.1.1,c.47.1.5 71741,71742 2hq1A 247 50.17 2qw5A 335 51.72 2ia2A 265 51.92 1j5sA 463 52.17 c.1.9.8 71580 1kagA 173 53.68 c.37.1.2 72249 1fvkA 189 54.25 c.47.1.13 90351 2g7uA 257 55.10 1j8mF 297 56.30 a.24.13.1,c.37.1.10 62742,62743 2ejwA 332 57.24 1td6A 306 58.26 a.234.1.1 112390 3c8mA 331 59.99 1s8nA 205 60.86 c.23.1.1 105374 1z7lA 276 61.29 1t7lA 766 61.61 2gsqA 202 61.69 a.45.1.1,c.47.1.5 17715,33009 2zfoA 140 62.01 2yxoA 267 62.59 1r1hA 696 62.80 d.92.1.4 104756 2b5aA 77 64.02 a.35.1.3 127882 2qq5A 260 64.54 1pbvA 195 64.65 a.118.3.1 19179 2pcjA 224 66.18 1tv8A 340 67.19 c.1.28.3 107352 7odcA 424 67.36 b.49.2.3,c.1.6.1 26488,28650 2nugA 221 68.88 2g50A 530 68.88 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 3b8dA 363 69.71 1spxA 278 70.23 c.2.1.2 98958 2r8wA 332 70.53 1tu7A 208 70.96 a.45.1.1,c.47.1.5 112653,112654 1ja9A 274 71.28 c.2.1.2 62817 2qu7A 288 72.38 2hi4A 495 73.20 1hf8A 289 74.07 a.7.8.2,a.118.9.3 90354,90355 1iy8A 267 74.53 c.2.1.2 83774 1b0nA 111 75.29 a.34.1.1,a.35.1.3 17001,17064 1pujA 282 76.11 c.37.1.8 88294 2dfwA 396 76.34 1nffA 260 76.88 c.2.1.2 80457 2bgkA 278 77.38 c.2.1.2 128480 1eg3A 261 78.93 a.39.1.7,a.39.1.7,b.72.1.1 17376,17377,27805 1jftA 340 79.14 a.35.1.5,c.93.1.1 66652,66653 1dqeA 137 79.17 a.39.2.1 17388 1wekA 217 79.69 c.129.1.1 114553 2r91A 286 82.82 1pmnA 364 83.87 d.144.1.7 94907 2ivxA 257 85.10 2rfpA 171 85.36 2on5A 206 86.33 1w5tA 412 86.43 a.4.5.11,c.37.1.20 114255,114256 2ioyA 283 86.63 1xszA 356 86.91 a.118.3.1,d.129.9.1 116005,116006 1bg4A 302 87.38 c.1.8.3 28806 2yviA 111 87.55 2h7cA 542 89.07 c.69.1.1 136207