# List of top-scoring protein chains for T0454.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vi0A 206 7.39e-20 a.4.1.9,a.121.1.1 100720,100721 1pb6A 212 3.82e-19 a.4.1.9,a.121.1.1 88017,88018 2ibdA 204 8.94e-18 3cdlA 203 1.53e-17 3bcgA 215 1.63e-17 3bhqA 211 9.56e-17 3bruA 222 7.40e-16 2uxuA 210 1.07e-15 2genA 197 2.23e-15 a.4.1.9,a.121.1.1 135062,135063 2iaiA 230 4.31e-15 2f07A 197 4.69e-15 3ccyA 203 5.77e-15 2hytA 197 1.15e-14 2fx0A 201 2.03e-14 a.4.1.9,a.121.1.1 134269,134270 1zkgA 212 2.57e-14 a.4.1.9,a.121.1.1 125194,125195 2id6A 202 2.57e-14 2iekA 200 2.60e-14 2d6yA 202 1.51e-13 a.4.1.9,a.121.1.1 131313,131314 2jj7A 186 1.62e-13 2g7sA 194 2.41e-13 a.4.1.9,a.121.1.1 134737,134738 2pbxA 203 2.61e-13 1rktA 205 1.14e-12 a.4.1.9,a.121.1.1 97623,97624 1rkwA 194 1.54e-12 a.4.1.9,a.121.1.1 104967,104968 1qvtA 194 1.54e-12 a.4.1.9,a.121.1.1 104602,104603 2eh3A 179 1.77e-12 1jt6A 188 1.87e-12 a.4.1.9,a.121.1.1 67247,67248 2nx4A 194 1.98e-12 1ui5A 215 2.22e-12 a.4.1.9,a.121.1.1 107856,107857 2qcoA 210 3.06e-12 2qtqA 213 3.41e-12 2g3bA 208 3.92e-12 a.4.1.9,a.121.1.1 134558,134559 2gfnA 209 4.00e-12 a.4.1.9,a.121.1.1 135101,135102 3c07A 273 4.76e-12 2q24A 194 7.92e-12 2fbqA 235 9.10e-12 a.4.1.9,a.121.1.1 133256,133257 2zcmA 192 1.37e-11 3crjA 199 1.48e-11 2zcnA 192 1.63e-11 2qibA 231 2.67e-11 1sgmA 191 3.14e-11 a.4.1.9,a.121.1.1 105537,105538 2qwtA 196 3.92e-11 2i10A 202 4.64e-11 a.4.1.9,a.121.1.1 136960,136961 2pz9A 226 8.68e-11 2fq4A 192 1.08e-10 a.4.1.9,a.121.1.1 133937,133938 2hyjA 200 1.09e-10 2raeA 207 1.51e-10 3b81A 203 1.84e-10 2of7A 260 2.00e-10 1u9nA 236 3.29e-10 a.4.1.9,a.121.1.1 113246,113247 1t56A 216 3.30e-10 a.4.1.9,a.121.1.1 106428,106429 2np3A 212 3.57e-10 a.4.1.9,a.121.1.1 138420,138421 2rasA 212 4.16e-10 2oerA 214 7.25e-10 3colA 196 7.61e-10 3c2bA 221 2.67e-09 3cwrA 208 2.96e-09 2zb9A 214 5.34e-09 2rekA 199 5.89e-09 3bjbA 207 8.93e-09 3cjdA 198 9.05e-09 1t33A 224 1.31e-08 a.4.1.9,a.121.1.1 106295,106296 2fd5A 180 1.35e-08 a.4.1.9,a.121.1.1 133291,133292 2id3A 225 1.42e-08 a.4.1.9,a.121.1.1 137261,137262 2np5A 203 1.49e-08 a.4.1.9,a.121.1.1 138424,138425 3bniA 229 1.76e-08 2guhA 214 1.84e-08 2dg7A 195 7.62e-08 2dg8A 193 7.92e-08 2hkuA 215 1.80e-07 3bqyA 209 1.97e-07 2dh0A 183 2.41e-07 1v7bA 185 2.52e-07 a.4.1.9,a.121.1.1 119861,119862 2yveA 185 2.54e-07 2yvhA 177 2.61e-07 2oi8A 216 5.67e-07 2o7oA 207 5.98e-07 a.4.1.9,a.121.1.1 138930,138931 2tctA 207 6.13e-07 a.4.1.9,a.121.1.1 16063,19240 1qpiA 203 6.47e-07 a.4.1.9,a.121.1.1 16072,19249 2trtA 217 6.73e-07 a.4.1.9,a.121.1.1 16064,19241 2ns7A 208 9.99e-07 2qkoA 215 1.06e-06 1z0xA 220 1.15e-06 a.4.1.9,a.121.1.1 124334,124335 2hxiA 241 1.31e-06 2vprA 207 2.87e-06 1a6iA 217 3.45e-06 a.4.1.9,a.121.1.1 16066,19243 1zk8A 183 5.72e-06 a.4.1.9,a.121.1.1 125177,125178 2o7tA 199 7.14e-06 2hxoA 237 4.51e-05 2g7lA 243 4.59e-05 a.4.1.9,a.121.1.1 134734,134735 2iu5A 195 8.46e-05 2optA 234 0.000779 2g7gA 213 0.001644 a.4.1.9,a.121.1.1 134732,134733 2zaiA 497 3.301 2o5hA 136 5.981 2nwuA 155 12.81 1kftA 78 20.78 a.60.2.3 77375 2pg4A 95 22.92 1zt2A 330 25.79 d.264.1.1 125624 3sc2B 152 33.40 1s1iX 120 34.81 i.1.1.1 105198 1whsB 153 35.38 1bcsB 160 37.84 2e85A 159 41.35 2i8lA 156 41.76 3c7nA 668 53.01 2qxlA 658 53.19 1t2aA 375 56.60 c.2.1.2 99078 2cv4A 250 56.75 c.47.1.10 130837 1du6A 64 63.15 a.4.1.1 16002 1pruA 56 65.32 a.35.1.5 17104 1hlvA 131 72.08 a.4.1.7,a.4.1.7 65854,65855 1qruA 553 73.62 b.53.1.2,c.26.1.1 26946,31585 1ud9A 245 74.21 d.131.1.2,d.131.1.2 107768,107769 1pufB 73 74.41 a.4.1.1 95132 1b72B 87 74.46 a.4.1.1 16001 2douA 376 75.59 2e0zA 345 76.79 3bj6A 152 78.48 2fh9A 274 78.69 2eueA 275 79.00 1s7oA 113 81.03 a.4.13.3 105354 2zctA 249 81.58 2nvlA 250 83.23 1nylA 539 83.81 b.53.1.2,c.26.1.1 80741,80742 1qtqA 553 86.71 b.53.1.2,c.26.1.1 26940,31579 1euyA 548 86.77 b.53.1.2,c.26.1.1 26945,31584 1qrsA 553 86.89 b.53.1.2,c.26.1.1 26941,31580 1o0cA 554 87.19 b.53.1.2,c.26.1.1 86529,86530 2d9pA 103 87.61 3cjeA 167 87.97