# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 3.21e-20 3bcgA 215 4.02e-20 3ccyA 203 5.36e-20 1vi0A 206 9.51e-20 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 1.13e-19 2ibdA 204 1.17e-19 2zb9A 214 1.32e-19 2uxuA 210 1.34e-19 2f07A 197 1.52e-19 2hyjA 200 1.66e-19 1rktA 205 1.66e-19 a.4.1.9,a.121.1.1 97623,97624 2g7sA 194 2.15e-19 a.4.1.9,a.121.1.1 134737,134738 2id6A 202 2.19e-19 2fq4A 192 2.39e-19 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 2.64e-19 3b81A 203 2.77e-19 3crjA 199 2.79e-19 2qtqA 213 2.93e-19 2iekA 200 2.95e-19 3cdlA 203 3.04e-19 1qvtA 194 3.48e-19 a.4.1.9,a.121.1.1 104602,104603 2rasA 212 3.97e-19 2genA 197 4.15e-19 a.4.1.9,a.121.1.1 135062,135063 3bruA 222 5.26e-19 3c2bA 221 5.67e-19 2raeA 207 9.42e-19 1jt6A 188 1.07e-18 a.4.1.9,a.121.1.1 67247,67248 2hytA 197 1.13e-18 1zkgA 212 1.17e-18 a.4.1.9,a.121.1.1 125194,125195 1pb6A 212 1.26e-18 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 2.26e-18 a.4.1.9,a.121.1.1 124588,124589 2of7A 260 2.32e-18 1t56A 216 2.55e-18 a.4.1.9,a.121.1.1 106428,106429 3cwrA 208 2.72e-18 2id3A 225 2.90e-18 a.4.1.9,a.121.1.1 137261,137262 2zcmA 192 3.00e-18 3colA 196 3.21e-18 2jj7A 186 3.29e-18 2iaiA 230 4.92e-18 2o7tA 199 5.03e-18 2qibA 231 5.11e-18 1ui5A 215 5.61e-18 a.4.1.9,a.121.1.1 107856,107857 2qcoA 210 5.63e-18 2iu5A 195 7.99e-18 2fx0A 201 9.88e-18 a.4.1.9,a.121.1.1 134269,134270 2fbqA 235 1.04e-17 a.4.1.9,a.121.1.1 133256,133257 2nx4A 194 1.08e-17 2gfnA 209 1.18e-17 a.4.1.9,a.121.1.1 135101,135102 3cjdA 198 1.41e-17 2vprA 207 1.52e-17 2i10A 202 1.90e-17 a.4.1.9,a.121.1.1 136960,136961 1sgmA 191 2.45e-17 a.4.1.9,a.121.1.1 105537,105538 3bniA 229 2.84e-17 1zk8A 183 3.10e-17 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 3.43e-17 a.4.1.9,a.121.1.1 131313,131314 2q24A 194 4.22e-17 2o7oA 207 6.85e-17 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 7.24e-17 2optA 234 7.91e-17 2g3bA 208 9.69e-17 a.4.1.9,a.121.1.1 134558,134559 3bqyA 209 1.00e-16 2oerA 214 1.35e-16 1t33A 224 1.66e-16 a.4.1.9,a.121.1.1 106295,106296 3bjbA 207 2.18e-16 2dg8A 193 2.56e-16 2np5A 203 2.71e-16 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 3.25e-16 2tct 207 4.43e-16 2g7gA 213 4.57e-16 a.4.1.9,a.121.1.1 134732,134733 2rekA 199 4.71e-16 2guhA 214 4.95e-16 2qkoA 215 5.25e-16 2qwtA 196 8.20e-16 2eh3A 179 1.82e-15 2oi8A 216 2.50e-15 1z0xA 220 2.83e-15 a.4.1.9,a.121.1.1 124334,124335 2fd5A 180 5.22e-15 a.4.1.9,a.121.1.1 133291,133292 1v7bA 185 8.48e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 3.23e-14 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.37e-13 2hkuA 215 3.38e-13 1hlvA 131 1.221 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.257 1a0p 290 2.446 2hnlA 225 3.886 2on5A 206 4.666 1jlwA 219 5.400 a.45.1.1,c.47.1.5 71741,71742 2dt5A 211 6.290 a.4.5.38,c.2.1.12 131708,131709 2pg4A 95 6.654 1on2A 142 8.842 a.4.5.24,a.76.1.1 87103,87104 2rcyA 262 9.191 1r9oA 477 11.24 a.104.1.1 104878 1xcbA 211 11.33 a.4.5.38,c.2.1.12 109552,109553 2dtr 226 12.18 2rn7A 108 14.89 1xo0A 324 15.45 a.60.9.1,d.163.1.1 115674,115675 1m5yA 408 15.56 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1wdcC 156 15.69 a.39.1.5 17317 1cjgA 62 15.70 a.35.1.5 17112 2ekcA 262 15.96 2fnaA 357 16.44 a.4.5.11,c.37.1.20 133809,133810 3c6gA 479 17.91 2ii0A 490 18.36 a.117.1.1 137425 1fseA 74 19.13 a.4.6.2 60000 2r8wA 332 19.51 3bkbA 377 19.78 2bjcA 62 21.64 a.35.1.5 128620 1ngkA 128 22.63 a.1.1.1 85673 1lvaA 258 23.38 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1je8A 82 24.69 a.4.6.2 77108 1zljA 78 27.10 1vbjA 281 28.43 1ho8A 480 28.88 a.118.1.9 61107 3bbyA 215 29.09 1g8lA 411 30.39 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1fnsA 196 30.44 c.62.1.1 34136 3cblA 377 31.80 1sedA 117 33.91 a.219.1.1 105449 2v9vA 135 33.99 3d0cA 314 35.27 2dh2A 424 35.29 1f2eA 201 36.97 a.45.1.1,c.47.1.5 17745,33039 2ntoA 201 37.82 1m48A 133 38.57 a.26.1.2 74443 1p4wA 99 39.43 a.4.6.2 87783 2ahrA 259 40.65 a.100.1.10,c.2.1.6 126775,126776 1xsvA 113 41.93 a.4.13.3 116003 2a2rA 210 46.37 a.45.1.1,c.47.1.5 126058,126059 2pvfA 334 47.36 2hoqA 241 47.50 2eb2A 334 47.89 1vz0A 230 48.63 a.4.14.1,d.268.1.1 108929,108930 3cbuA 214 49.24 1w07A 659 49.86 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1hcrA 52 50.42 a.4.1.2 16020 2fuqA 747 50.80 2fiqA 420 51.22 c.1.10.7 133527 1resA 43 52.09 a.4.1.2 16023 2cx5A 158 52.65 2no4A 240 53.33 1gvfA 286 56.24 c.1.10.2 70599 2rfpA 171 56.75 1s7oA 113 57.45 a.4.13.3 105354 1wdvA 152 58.19 d.116.1.1 114539 1m0uA 249 59.42 a.45.1.1,c.47.1.5 78359,78360 1n2aA 201 59.55 a.45.1.1,c.47.1.5 91553,91554 1f1eA 154 62.17 a.22.1.2 64927 1a0fA 201 63.33 a.45.1.1,c.47.1.5 17737,33031 1tu7A 208 64.90 a.45.1.1,c.47.1.5 112653,112654 2dtrA 226 65.70 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1fw1A 216 66.43 a.45.1.1,c.47.1.5 60051,60052 1zcbA 362 66.57 a.66.1.1,c.37.1.8 124901,124902 2o3fA 111 66.87 1j09A 468 66.90 a.97.1.1,c.26.1.1 77025,77026 1f21A 155 67.21 c.55.3.1 33550 2imiA 221 67.32 1oqyA 368 67.66 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1oe8A 211 67.71 a.45.1.1,c.47.1.5 86905,86906 2reiA 318 68.39 2pvqA 201 68.66 1anfA 370 69.11 c.94.1.1 35776 2o09A 189 69.42 1qqcA 773 69.52 c.55.3.5,e.8.1.1 33724,43013 1x9fA 151 70.26 a.1.1.2 114983 2zfoC 147 74.19 2gdrA 202 75.28 1x1zA 252 77.83 c.1.2.3 121613 1sfxA 109 79.51 a.4.5.50 105505 2rfgA 297 80.25 3inkC 133 80.36 a.26.1.2 16881 1nhyA 219 82.50 a.45.1.1,c.47.1.5 80520,80521 1jlvA 209 82.84 a.45.1.1,c.47.1.5 71729,71730 2ghaA 382 82.96 4crxA 322 83.37 a.60.9.1,d.163.1.1 18095,42155 1cipA 353 84.88 a.66.1.1,c.37.1.8 18210,32093 2q0zX 339 85.54 2ehhA 294 88.09 1ltqA 301 88.91 c.108.1.9,c.37.1.1 78208,78209