# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bcgA 215 3.00e-22 2pbxA 203 4.31e-22 3ccyA 203 1.04e-21 3bhqA 211 1.08e-21 1vi0A 206 1.27e-21 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 1.38e-21 2zb9A 214 1.57e-21 2ibdA 204 2.29e-21 3cdlA 203 2.66e-21 1rktA 205 2.78e-21 a.4.1.9,a.121.1.1 97623,97624 2hyjA 200 2.84e-21 2g7sA 194 3.35e-21 a.4.1.9,a.121.1.1 134737,134738 2f07A 197 3.45e-21 2iekA 200 3.92e-21 2id6A 202 4.07e-21 3crjA 199 4.28e-21 3b81A 203 4.47e-21 2fq4A 192 5.15e-21 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 5.48e-21 2rasA 212 6.90e-21 2qtqA 213 7.17e-21 1qvtA 194 7.50e-21 a.4.1.9,a.121.1.1 104602,104603 3c2bA 221 8.31e-21 2genA 197 8.93e-21 a.4.1.9,a.121.1.1 135062,135063 3bruA 222 9.54e-21 3cjdA 198 1.63e-20 1jt6A 188 2.12e-20 a.4.1.9,a.121.1.1 67247,67248 1z77A 200 2.63e-20 a.4.1.9,a.121.1.1 124588,124589 2hytA 197 2.64e-20 1zkgA 212 2.80e-20 a.4.1.9,a.121.1.1 125194,125195 2raeA 207 2.82e-20 1pb6A 212 3.23e-20 a.4.1.9,a.121.1.1 88017,88018 1t56A 216 3.99e-20 a.4.1.9,a.121.1.1 106428,106429 2of7A 260 4.84e-20 3colA 196 5.99e-20 3cwrA 208 6.07e-20 2id3A 225 6.24e-20 a.4.1.9,a.121.1.1 137261,137262 2qcoA 210 7.42e-20 2zcmA 192 7.58e-20 2jj7A 186 8.03e-20 2iaiA 230 1.23e-19 2nx4A 194 1.48e-19 2o7tA 199 1.48e-19 1ui5A 215 1.67e-19 a.4.1.9,a.121.1.1 107856,107857 2iu5A 195 1.72e-19 2qibA 231 1.93e-19 2fbqA 235 1.97e-19 a.4.1.9,a.121.1.1 133256,133257 2gfnA 209 2.04e-19 a.4.1.9,a.121.1.1 135101,135102 2fx0A 201 2.77e-19 a.4.1.9,a.121.1.1 134269,134270 2vprA 207 4.96e-19 1sgmA 191 5.19e-19 a.4.1.9,a.121.1.1 105537,105538 2i10A 202 7.27e-19 a.4.1.9,a.121.1.1 136960,136961 2q24A 194 8.15e-19 1zk8A 183 9.12e-19 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 1.03e-18 a.4.1.9,a.121.1.1 131313,131314 3bniA 229 1.64e-18 2o7oA 207 1.73e-18 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 2.52e-18 2optA 234 2.97e-18 3bqyA 209 3.54e-18 2oerA 214 4.31e-18 2g3bA 208 4.74e-18 a.4.1.9,a.121.1.1 134558,134559 3bjbA 207 5.87e-18 2dg8A 193 6.55e-18 1t33A 224 6.55e-18 a.4.1.9,a.121.1.1 106295,106296 2qkoA 215 8.21e-18 2yveA 185 8.33e-18 2np5A 203 9.96e-18 a.4.1.9,a.121.1.1 138424,138425 2g7gA 213 1.53e-17 a.4.1.9,a.121.1.1 134732,134733 2guhA 214 1.72e-17 2tct 207 1.82e-17 2rekA 199 2.19e-17 2qwtA 196 3.15e-17 2oi8A 216 6.03e-17 2eh3A 179 7.57e-17 2fd5A 180 9.77e-17 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 1.20e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 4.90e-16 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.63e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 7.45e-15 2hkuA 215 2.36e-14 2jn6A 97 1.980 2on5A 206 2.055 1hlvA 131 2.746 a.4.1.7,a.4.1.7 65854,65855 2hnlA 225 4.007 1on2A 142 6.681 a.4.5.24,a.76.1.1 87103,87104 2ekcA 262 7.360 1a0p 290 10.40 1m48A 133 10.41 a.26.1.2 74443 1w07A 659 10.51 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1jlwA 219 11.34 a.45.1.1,c.47.1.5 71741,71742 2pg4A 95 12.12 1wdcC 156 12.26 a.39.1.5 17317 1xcbA 211 12.75 a.4.5.38,c.2.1.12 109552,109553 1vbjA 281 13.06 2rn7A 108 13.09 1xo0A 324 14.01 a.60.9.1,d.163.1.1 115674,115675 2dt5A 211 14.18 a.4.5.38,c.2.1.12 131708,131709 2ntoA 201 14.91 2fnaA 357 16.25 a.4.5.11,c.37.1.20 133809,133810 2gsqA 202 17.31 a.45.1.1,c.47.1.5 17715,33009 1f21A 155 17.62 c.55.3.1 33550 2dtr 226 17.74 1ngkA 128 18.04 a.1.1.1 85673 1ho8A 480 18.12 a.118.1.9 61107 1tu7A 208 18.29 a.45.1.1,c.47.1.5 112653,112654 1m0uA 249 18.77 a.45.1.1,c.47.1.5 78359,78360 2rcyA 262 19.30 1r9oA 477 19.45 a.104.1.1 104878 2ii0A 490 21.02 a.117.1.1 137425 2r8wA 332 21.75 1m5yA 408 21.98 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 3c6gA 479 23.45 2a2rA 210 23.65 a.45.1.1,c.47.1.5 126058,126059 1f2eA 201 24.60 a.45.1.1,c.47.1.5 17745,33039 1sedA 117 27.16 a.219.1.1 105449 2eb2A 334 28.46 3bkbA 377 29.27 2fiqA 420 29.28 c.1.10.7 133527 2dh2A 424 29.57 3bbyA 215 30.84 1g8lA 411 30.92 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1qqcA 773 31.31 c.55.3.5,e.8.1.1 33724,43013 3cbuA 214 33.98 1nhyA 219 35.34 a.45.1.1,c.47.1.5 80520,80521 2ahrA 259 35.37 a.100.1.10,c.2.1.6 126775,126776 2dvzA 314 38.15 1zd8A 227 38.26 2c4jA 218 38.85 a.45.1.1,c.47.1.5 129816,129817 2pvqA 201 39.00 1oe8A 211 39.95 a.45.1.1,c.47.1.5 86905,86906 2bjcA 62 40.63 a.35.1.5 128620 1n2aA 201 40.99 a.45.1.1,c.47.1.5 91553,91554 1gkzA 388 41.41 a.29.5.1,d.122.1.4 65268,65269 1fseA 74 42.13 a.4.6.2 60000 1cjgA 62 42.39 a.35.1.5 17112 2no4A 240 43.24 1je8A 82 43.39 a.4.6.2 77108 2rfpA 171 43.75 3cblA 377 43.94 1zljA 78 47.24 4crxA 322 48.44 a.60.9.1,d.163.1.1 18095,42155 2qkbA 154 49.92 3d0cA 314 51.06 2qguA 211 51.90 2oezA 247 54.90 2o09A 189 55.32 1fnsA 196 57.46 c.62.1.1 34136 2gdrA 202 58.36 2pvfA 334 58.73 1fw1A 216 58.79 a.45.1.1,c.47.1.5 60051,60052 1f1eA 154 59.51 a.22.1.2 64927 1x1zA 252 60.06 c.1.2.3 121613 2f5xA 312 61.81 1a0fA 201 62.38 a.45.1.1,c.47.1.5 17737,33031 2q0zX 339 64.74 1k3yA 221 65.31 a.45.1.1,c.47.1.5 77245,77246 1gvfA 286 66.07 c.1.10.2 70599 1lbkA 208 66.85 a.45.1.1,c.47.1.5 73809,73810 1pp7U 131 67.04 a.4.5.44 94973 1f3aA 222 69.24 a.45.1.1,c.47.1.5 17701,32995 1ltqA 301 71.51 c.108.1.9,c.37.1.1 78208,78209 2cx5A 158 72.14 1j09A 468 72.82 a.97.1.1,c.26.1.1 77025,77026 1oqyA 368 73.15 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2reiA 318 73.82 1p4wA 99 73.96 a.4.6.2 87783 2ghaA 382 75.10 2rfgA 297 76.96 1resA 43 79.99 a.4.1.2 16023 2nxoA 291 81.24 1lvaA 258 85.15 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1qkmA 255 85.52 a.123.1.1 19309 2cujA 108 85.53 a.4.1.18 130812 2ehhA 294 86.64 1xszA 356 86.75 a.118.3.1,d.129.9.1 116005,116006 2imiA 221 86.92 1bl0A 129 87.69 a.4.1.8,a.4.1.8 16053,16054 1pgtA 210 88.05 a.45.1.1,c.47.1.5 17515,32809