# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 6.15e-22 3bcgA 215 9.89e-22 1vi0A 206 2.75e-21 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 3.63e-21 2zb9A 214 4.00e-21 2g7sA 194 4.98e-21 a.4.1.9,a.121.1.1 134737,134738 3bhqA 211 5.04e-21 2uxuA 210 5.05e-21 3ccyA 203 5.25e-21 2f07A 197 6.95e-21 3cdlA 203 6.99e-21 2genA 197 7.37e-21 a.4.1.9,a.121.1.1 135062,135063 3bruA 222 9.40e-21 2hyjA 200 1.02e-20 2rasA 212 1.05e-20 1rktA 205 1.19e-20 a.4.1.9,a.121.1.1 97623,97624 3b81A 203 1.26e-20 2qtqA 213 1.31e-20 2iekA 200 1.37e-20 2id6A 202 1.48e-20 2dg7A 195 1.59e-20 3crjA 199 1.72e-20 3c2bA 221 1.78e-20 1qvtA 194 1.87e-20 a.4.1.9,a.121.1.1 104602,104603 2fq4A 192 2.04e-20 a.4.1.9,a.121.1.1 133937,133938 2raeA 207 3.72e-20 1jt6A 188 5.52e-20 a.4.1.9,a.121.1.1 67247,67248 3cjdA 198 6.14e-20 2id3A 225 6.31e-20 a.4.1.9,a.121.1.1 137261,137262 1pb6A 212 6.71e-20 a.4.1.9,a.121.1.1 88017,88018 1zkgA 212 7.45e-20 a.4.1.9,a.121.1.1 125194,125195 2of7A 260 8.99e-20 2jj7A 186 9.05e-20 2hytA 197 9.06e-20 1z77A 200 1.12e-19 a.4.1.9,a.121.1.1 124588,124589 3cwrA 208 1.14e-19 1t56A 216 1.44e-19 a.4.1.9,a.121.1.1 106428,106429 3colA 196 1.52e-19 2zcmA 192 1.60e-19 2iaiA 230 2.03e-19 2gfnA 209 2.15e-19 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 2.92e-19 2qcoA 210 3.02e-19 1ui5A 215 3.94e-19 a.4.1.9,a.121.1.1 107856,107857 2fx0A 201 5.97e-19 a.4.1.9,a.121.1.1 134269,134270 2fbqA 235 6.32e-19 a.4.1.9,a.121.1.1 133256,133257 2i10A 202 6.89e-19 a.4.1.9,a.121.1.1 136960,136961 2qibA 231 7.47e-19 2o7tA 199 8.15e-19 1sgmA 191 8.55e-19 a.4.1.9,a.121.1.1 105537,105538 2vprA 207 1.08e-18 2d6yA 202 1.22e-18 a.4.1.9,a.121.1.1 131313,131314 2q24A 194 1.62e-18 2iu5A 195 2.15e-18 1zk8A 183 2.95e-18 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 3.57e-18 2g3bA 208 4.08e-18 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 5.94e-18 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 8.66e-18 3bqyA 209 1.40e-17 2optA 234 1.43e-17 2oerA 214 1.61e-17 1t33A 224 2.20e-17 a.4.1.9,a.121.1.1 106295,106296 2dg8A 193 2.89e-17 3bjbA 207 2.98e-17 2tct 207 3.46e-17 2np5A 203 3.93e-17 a.4.1.9,a.121.1.1 138424,138425 2rekA 199 4.33e-17 2yveA 185 4.65e-17 2g7gA 213 4.70e-17 a.4.1.9,a.121.1.1 134732,134733 2guhA 214 5.65e-17 2qwtA 196 6.90e-17 2qkoA 215 1.06e-16 2fd5A 180 1.81e-16 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 2.84e-16 a.4.1.9,a.121.1.1 124334,124335 2eh3A 179 3.41e-16 2oi8A 216 4.65e-16 1v7bA 185 2.06e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 4.60e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 9.63e-15 2hkuA 215 2.95e-14 1hlvA 131 0.6466 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 0.7915 2pg4A 95 2.408 1on2A 142 2.466 a.4.5.24,a.76.1.1 87103,87104 2hnlA 225 3.021 2dt5A 211 3.312 a.4.5.38,c.2.1.12 131708,131709 1xcbA 211 3.630 a.4.5.38,c.2.1.12 109552,109553 1a0p 290 4.299 1fseA 74 6.336 a.4.6.2 60000 2rn7A 108 6.522 1zljA 78 7.092 1je8A 82 7.181 a.4.6.2 77108 2rcyA 262 7.306 2bjcA 62 7.840 a.35.1.5 128620 1cjgA 62 7.940 a.35.1.5 17112 1x1zA 252 7.998 c.1.2.3 121613 1lvaA 258 8.054 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2on5A 206 8.117 1p4wA 99 9.882 a.4.6.2 87783 2fnaA 357 10.02 a.4.5.11,c.37.1.20 133809,133810 1fnsA 196 12.00 c.62.1.1 34136 2ahrA 259 14.30 a.100.1.10,c.2.1.6 126775,126776 1zd8A 227 15.48 1w07A 659 16.46 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2o3fA 111 17.45 1m48A 133 18.37 a.26.1.2 74443 1vbjA 281 19.95 2r8wA 332 20.65 3bbyA 215 21.29 2v9vA 135 21.71 3c6gA 479 21.72 2obhA 143 22.58 1vz0A 230 23.89 a.4.14.1,d.268.1.1 108929,108930 1f2eA 201 26.12 a.45.1.1,c.47.1.5 17745,33039 2biiA 424 26.42 1s7oA 113 27.08 a.4.13.3 105354 1sfxA 109 27.84 a.4.5.50 105505 1m0uA 249 28.06 a.45.1.1,c.47.1.5 78359,78360 1r9oA 477 30.84 a.104.1.1 104878 1j09A 468 31.17 a.97.1.1,c.26.1.1 77025,77026 1wdvA 152 31.84 d.116.1.1 114539 1xsvA 113 33.28 a.4.13.3 116003 2cx5A 158 33.68 1ijbA 202 34.83 c.62.1.1 71229 2q0zX 339 37.29 2dh2A 424 37.64 1anfA 370 37.76 c.94.1.1 35776 1sedA 117 40.94 a.219.1.1 105449 2fiqA 420 41.97 c.1.10.7 133527 1wdcC 156 42.36 a.39.1.5 17317 2hoqA 241 43.26 2bnmA 198 44.62 a.35.1.3,b.82.1.10 128835,128836 1qqcA 773 44.96 c.55.3.5,e.8.1.1 33724,43013 2ghaA 382 46.09 1wpkA 146 46.90 1wsuA 124 47.16 a.4.5.35,a.4.5.35 121245,121246 2gv5A 161 48.21 1oqyA 368 48.31 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 3cloA 258 49.58 1zcbA 362 50.67 a.66.1.1,c.37.1.8 124901,124902 2o09A 189 51.68 2rfpA 171 53.06 1f21A 155 53.46 c.55.3.1 33550 1r69 69 54.35 1neqA 74 54.46 a.35.1.2 17063 1y1xA 191 54.56 a.39.1.8 116374 1utxA 66 55.02 a.35.1.3 108034 2o8xA 70 56.04 1l3lA 234 56.14 a.4.6.2,d.110.5.1 73541,73542 3inkC 133 56.48 a.26.1.2 16881 1g8lA 411 56.70 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1ltqA 301 59.49 c.108.1.9,c.37.1.1 78208,78209 3c57A 95 59.57 1jftA 340 59.93 a.35.1.5,c.93.1.1 66652,66653 1rzsA 61 60.30 a.35.1.2 105139 2o5gA 148 60.38 1ku1A 230 60.54 a.118.3.1 72996 2dtr 226 63.29 1auiB 169 64.23 a.39.1.5 17325 1f1eA 154 65.49 a.22.1.2 64927 2a2rA 210 67.02 a.45.1.1,c.47.1.5 126058,126059 1gkzA 388 68.72 a.29.5.1,d.122.1.4 65268,65269 1xo0A 324 68.98 a.60.9.1,d.163.1.1 115674,115675 1f4qA 165 69.32 a.39.1.8 17360 1rec 201 69.45 3cbuA 214 69.85 2no4A 240 70.04 2bbrA 195 71.08 1resA 43 71.43 a.4.1.2 16023 2jamA 304 71.53 1adrA 76 72.31 a.35.1.2 17042 2ptzA 432 72.41 1yqgA 263 75.62 1m5yA 408 76.81 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2scpA 174 79.54 a.39.1.5 17256 2ekcA 262 80.16 1i5nA 146 82.15 a.24.10.3 61805 1gvfA 286 82.67 c.1.10.2 70599 1r1tA 122 83.13 a.4.5.5 104769 1r69A 69 84.34 a.35.1.2 17028 1pjr 724 84.60 1fx7A 230 84.79 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1u2wA 122 85.48 a.4.5.5 119487 2zfoC 147 86.05 2ab5A 269 86.41 1a0fA 201 86.80 a.45.1.1,c.47.1.5 17737,33031 1smtA 122 87.65 a.4.5.5 16109 2croA 71 87.97 a.35.1.2 17038 2nszA 129 88.27 a.118.1.14 138560 2cro 71 88.44 2cujA 108 89.26 a.4.1.18 130812 1k94A 165 89.72 a.39.1.8 68333