# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 1.67e-21 3ccyA 203 1.91e-21 2pbxA 203 2.21e-21 1vi0A 206 2.91e-21 a.4.1.9,a.121.1.1 100720,100721 2id6A 202 7.33e-21 2ibdA 204 7.39e-21 3bcgA 215 9.11e-21 3cdlA 203 9.13e-21 1rktA 205 9.57e-21 a.4.1.9,a.121.1.1 97623,97624 2zb9A 214 9.67e-21 2hyjA 200 1.10e-20 1qvtA 194 1.35e-20 a.4.1.9,a.121.1.1 104602,104603 2iekA 200 1.35e-20 2f07A 197 1.37e-20 2g7sA 194 1.75e-20 a.4.1.9,a.121.1.1 134737,134738 3c2bA 221 1.81e-20 2dg7A 195 1.92e-20 3b81A 203 2.12e-20 3crjA 199 2.46e-20 2uxuA 210 2.73e-20 2fq4A 192 2.87e-20 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 3.10e-20 a.4.1.9,a.121.1.1 125194,125195 2qtqA 213 4.13e-20 2rasA 212 4.17e-20 1jt6A 188 4.43e-20 a.4.1.9,a.121.1.1 67247,67248 2qcoA 210 4.93e-20 2genA 197 5.51e-20 a.4.1.9,a.121.1.1 135062,135063 2raeA 207 6.55e-20 2hytA 197 9.38e-20 1z77A 200 9.58e-20 a.4.1.9,a.121.1.1 124588,124589 3bruA 222 9.81e-20 2of7A 260 1.15e-19 2id3A 225 2.29e-19 a.4.1.9,a.121.1.1 137261,137262 3colA 196 2.44e-19 3cwrA 208 2.54e-19 1t56A 216 2.67e-19 a.4.1.9,a.121.1.1 106428,106429 1pb6A 212 3.07e-19 a.4.1.9,a.121.1.1 88017,88018 2zcmA 192 3.44e-19 2jj7A 186 4.13e-19 2o7tA 199 4.42e-19 1ui5A 215 4.75e-19 a.4.1.9,a.121.1.1 107856,107857 2iu5A 195 5.05e-19 2qibA 231 5.32e-19 2nx4A 194 6.86e-19 2iaiA 230 7.73e-19 3cjdA 198 9.72e-19 2gfnA 209 9.89e-19 a.4.1.9,a.121.1.1 135101,135102 2fx0A 201 1.09e-18 a.4.1.9,a.121.1.1 134269,134270 2vprA 207 1.64e-18 1sgmA 191 1.88e-18 a.4.1.9,a.121.1.1 105537,105538 3bniA 229 1.95e-18 2fbqA 235 2.12e-18 a.4.1.9,a.121.1.1 133256,133257 1zk8A 183 2.78e-18 a.4.1.9,a.121.1.1 125177,125178 2i10A 202 4.14e-18 a.4.1.9,a.121.1.1 136960,136961 2q24A 194 5.68e-18 2g3bA 208 5.78e-18 a.4.1.9,a.121.1.1 134558,134559 2d6yA 202 5.84e-18 a.4.1.9,a.121.1.1 131313,131314 2o7oA 207 9.00e-18 a.4.1.9,a.121.1.1 138930,138931 2optA 234 1.20e-17 1a6i 217 1.93e-17 2oerA 214 1.96e-17 1t33A 224 2.17e-17 a.4.1.9,a.121.1.1 106295,106296 2qkoA 215 2.53e-17 2np5A 203 2.84e-17 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 3.32e-17 3bqyA 209 3.37e-17 2tct 207 3.38e-17 3bjbA 207 4.01e-17 2g7gA 213 5.92e-17 a.4.1.9,a.121.1.1 134732,134733 2dg8A 193 6.06e-17 2rekA 199 8.07e-17 2guhA 214 1.07e-16 2oi8A 216 1.11e-16 2fd5A 180 1.29e-16 a.4.1.9,a.121.1.1 133291,133292 2qwtA 196 1.92e-16 2eh3A 179 3.76e-16 1z0xA 220 5.29e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.82e-15 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 5.57e-15 2g7lA 243 7.22e-15 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 3.27e-14 2jn6A 97 2.526 2on5A 206 3.850 1wdcC 156 5.435 a.39.1.5 17317 1jlwA 219 5.637 a.45.1.1,c.47.1.5 71741,71742 1a0p 290 5.913 2hnlA 225 6.094 1hlvA 131 7.268 a.4.1.7,a.4.1.7 65854,65855 1ho8A 480 8.105 a.118.1.9 61107 2pg4A 95 9.219 1on2A 142 10.22 a.4.5.24,a.76.1.1 87103,87104 2rcyA 262 10.58 1ngkA 128 11.56 a.1.1.1 85673 1r9oA 477 14.91 a.104.1.1 104878 2ii0A 490 15.52 a.117.1.1 137425 1cjgA 62 16.23 a.35.1.5 17112 2ahrA 259 17.46 a.100.1.10,c.2.1.6 126775,126776 2v9vA 135 17.95 2bjcA 62 18.66 a.35.1.5 128620 3b6hA 498 18.95 2dt5A 211 20.06 a.4.5.38,c.2.1.12 131708,131709 1m48A 133 20.61 a.26.1.2 74443 1g8lA 411 21.28 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2fnaA 357 21.99 a.4.5.11,c.37.1.20 133809,133810 2ekcA 262 22.14 1nhyA 219 22.92 a.45.1.1,c.47.1.5 80520,80521 1fseA 74 22.96 a.4.6.2 60000 1oe8A 211 23.23 a.45.1.1,c.47.1.5 86905,86906 1f21A 155 23.76 c.55.3.1 33550 3bkbA 377 24.86 1xo0A 324 25.15 a.60.9.1,d.163.1.1 115674,115675 1vbjA 281 25.27 2gsqA 202 26.57 a.45.1.1,c.47.1.5 17715,33009 3cblA 377 27.94 1xcbA 211 29.02 a.4.5.38,c.2.1.12 109552,109553 1gvfA 286 29.27 c.1.10.2 70599 2q88A 257 32.08 3d0cA 314 33.91 2dvzA 314 34.10 2dtr 226 34.36 3chhA 336 34.85 1f1eA 154 35.64 a.22.1.2 64927 1zcbA 362 36.64 a.66.1.1,c.37.1.8 124901,124902 2a2rA 210 39.57 a.45.1.1,c.47.1.5 126058,126059 1zljA 78 41.17 3bbyA 215 42.33 1sedA 117 43.09 a.219.1.1 105449 2pvqA 201 43.43 1ug3A 339 45.23 a.118.1.14,a.118.1.14 119671,119672 2ntoA 201 45.59 2q0zX 339 46.33 1je8A 82 46.38 a.4.6.2 77108 2pvfA 334 46.83 1lvaA 258 47.97 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3inkC 133 48.36 a.26.1.2 16881 1anfA 370 49.51 c.94.1.1 35776 1xszA 356 49.80 a.118.3.1,d.129.9.1 116005,116006 2eb2A 334 52.01 2f5xA 312 52.63 1j09A 468 53.43 a.97.1.1,c.26.1.1 77025,77026 1f2eA 201 55.10 a.45.1.1,c.47.1.5 17745,33039 1fnsA 196 56.15 c.62.1.1 34136 2reiA 318 56.27 2rn7A 108 56.45 3c6gA 479 59.18 2o8xA 70 59.37 1u61A 138 60.97 a.149.1.1 107696 1ltqA 301 61.39 c.108.1.9,c.37.1.1 78208,78209 1qqcA 773 61.65 c.55.3.5,e.8.1.1 33724,43013 2qkbA 154 61.92 1lshA 1056 61.98 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1pp7U 131 62.38 a.4.5.44 94973 2o3fA 111 62.94 1w07A 659 65.55 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 2fuqA 747 65.80 1k3yA 221 65.94 a.45.1.1,c.47.1.5 77245,77246 1f24A 402 67.37 a.104.1.1 18953 1p4wA 99 68.47 a.4.6.2 87783 1kxuA 333 69.80 a.74.1.1,a.74.1.1 18358,18359 2o09A 189 70.40 1x1zA 252 70.76 c.1.2.3 121613 1oh0A 131 74.66 d.17.4.3 87004 1aw9A 216 75.40 a.45.1.1,c.47.1.5 17736,33030 1wdvA 152 75.91 d.116.1.1 114539 2ehhA 294 76.83 1jl1A 155 77.49 c.55.3.1 66821 2c1mA 424 77.75 3bjdA 332 78.91 1jpzA 473 78.92 a.104.1.1 67069 2bk9A 153 81.00 2ghaA 382 81.15 2f9iB 285 81.43 2r8wA 332 82.96 1k94A 165 83.05 a.39.1.8 68333 2gykA 86 83.63 2cx5A 158 84.57 1a0fA 201 87.30 a.45.1.1,c.47.1.5 17737,33031 1elrA 131 87.64 a.118.8.1 19209 1m0uA 249 87.89 a.45.1.1,c.47.1.5 78359,78360 2hiqA 113 88.01 d.58.4.12 136529 1s7oA 113 89.90 a.4.13.3 105354