# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bhqA 211 2.03e-21 2pbxA 203 2.13e-21 3ccyA 203 2.38e-21 1vi0A 206 2.89e-21 a.4.1.9,a.121.1.1 100720,100721 2zb9A 214 8.09e-21 2hyjA 200 8.27e-21 2id6A 202 8.68e-21 3cdlA 203 9.39e-21 1rktA 205 1.06e-20 a.4.1.9,a.121.1.1 97623,97624 3bcgA 215 1.12e-20 2ibdA 204 1.25e-20 2f07A 197 1.26e-20 2iekA 200 1.35e-20 2g7sA 194 1.59e-20 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 1.63e-20 a.4.1.9,a.121.1.1 104602,104603 3c2bA 221 1.72e-20 3crjA 199 2.15e-20 2dg7A 195 2.20e-20 3b81A 203 2.26e-20 2uxuA 210 3.03e-20 2fq4A 192 3.06e-20 a.4.1.9,a.121.1.1 133937,133938 1zkgA 212 3.06e-20 a.4.1.9,a.121.1.1 125194,125195 2rasA 212 3.21e-20 2qtqA 213 4.75e-20 1jt6A 188 5.42e-20 a.4.1.9,a.121.1.1 67247,67248 2qcoA 210 6.17e-20 2genA 197 6.76e-20 a.4.1.9,a.121.1.1 135062,135063 2raeA 207 7.19e-20 2hytA 197 7.70e-20 3bruA 222 9.46e-20 1z77A 200 9.56e-20 a.4.1.9,a.121.1.1 124588,124589 2of7A 260 1.34e-19 2id3A 225 1.68e-19 a.4.1.9,a.121.1.1 137261,137262 3colA 196 1.92e-19 3cwrA 208 2.44e-19 1t56A 216 3.36e-19 a.4.1.9,a.121.1.1 106428,106429 1pb6A 212 3.66e-19 a.4.1.9,a.121.1.1 88017,88018 2jj7A 186 4.62e-19 2zcmA 192 5.07e-19 1ui5A 215 5.28e-19 a.4.1.9,a.121.1.1 107856,107857 2iu5A 195 5.36e-19 2qibA 231 5.42e-19 2o7tA 199 6.34e-19 2iaiA 230 6.46e-19 2nx4A 194 7.39e-19 2fx0A 201 1.08e-18 a.4.1.9,a.121.1.1 134269,134270 3cjdA 198 1.14e-18 2gfnA 209 1.18e-18 a.4.1.9,a.121.1.1 135101,135102 2vprA 207 1.55e-18 3bniA 229 1.69e-18 1sgmA 191 2.11e-18 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 2.32e-18 a.4.1.9,a.121.1.1 133256,133257 2i10A 202 3.38e-18 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 4.60e-18 a.4.1.9,a.121.1.1 125177,125178 2g3bA 208 6.02e-18 a.4.1.9,a.121.1.1 134558,134559 2q24A 194 6.33e-18 2o7oA 207 7.32e-18 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 9.08e-18 a.4.1.9,a.121.1.1 131313,131314 2optA 234 9.90e-18 1a6i 217 1.84e-17 2qkoA 215 2.04e-17 2oerA 214 2.49e-17 2tct 207 2.67e-17 2np5A 203 2.78e-17 a.4.1.9,a.121.1.1 138424,138425 3bqyA 209 3.46e-17 1t33A 224 3.74e-17 a.4.1.9,a.121.1.1 106295,106296 2g7gA 213 4.29e-17 a.4.1.9,a.121.1.1 134732,134733 3bjbA 207 4.97e-17 2yveA 185 5.22e-17 2dg8A 193 6.01e-17 2rekA 199 7.24e-17 2fd5A 180 9.26e-17 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 1.12e-16 2guhA 214 1.14e-16 2qwtA 196 3.52e-16 2eh3A 179 3.91e-16 1z0xA 220 4.76e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 3.19e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 5.62e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 6.43e-15 2hkuA 215 3.57e-14 2jn6A 97 2.200 1hlvA 131 4.432 a.4.1.7,a.4.1.7 65854,65855 1jlwA 219 4.977 a.45.1.1,c.47.1.5 71741,71742 2hnlA 225 5.281 1a0p 290 5.454 2pg4A 95 7.751 1wdcC 156 9.023 a.39.1.5 17317 1ngkA 128 10.99 a.1.1.1 85673 2rcyA 262 10.99 1r9oA 477 12.22 a.104.1.1 104878 2on5A 206 12.38 1cjgA 62 12.90 a.35.1.5 17112 1ho8A 480 13.30 a.118.1.9 61107 1nhyA 219 13.88 a.45.1.1,c.47.1.5 80520,80521 2ii0A 490 14.49 a.117.1.1 137425 2dt5A 211 15.64 a.4.5.38,c.2.1.12 131708,131709 1xo0A 324 17.26 a.60.9.1,d.163.1.1 115674,115675 2bjcA 62 17.37 a.35.1.5 128620 1g8lA 411 17.43 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2ekcA 262 17.44 1fseA 74 17.50 a.4.6.2 60000 2gsqA 202 17.60 a.45.1.1,c.47.1.5 17715,33009 1oe8A 211 19.71 a.45.1.1,c.47.1.5 86905,86906 3bkbA 377 19.71 3cblA 377 19.95 2ahrA 259 20.23 a.100.1.10,c.2.1.6 126775,126776 2v9vA 135 22.20 1vbjA 281 23.49 2pvfA 334 23.73 1on2A 142 23.89 a.4.5.24,a.76.1.1 87103,87104 1f21A 155 23.97 c.55.3.1 33550 1zcbA 362 25.34 a.66.1.1,c.37.1.8 124901,124902 1gvfA 286 25.63 c.1.10.2 70599 2q88A 257 29.12 2dvzA 314 29.18 1m48A 133 30.14 a.26.1.2 74443 1je8A 82 30.88 a.4.6.2 77108 1fnsA 196 32.93 c.62.1.1 34136 1xcbA 211 33.23 a.4.5.38,c.2.1.12 109552,109553 1zljA 78 33.50 2fnaA 357 33.51 a.4.5.11,c.37.1.20 133809,133810 1f2eA 201 33.78 a.45.1.1,c.47.1.5 17745,33039 3b6hA 498 34.04 2reiA 318 35.51 2a2rA 210 36.96 a.45.1.1,c.47.1.5 126058,126059 2rn7A 108 37.31 1u61A 138 41.20 a.149.1.1 107696 1ug3A 339 42.01 a.118.1.14,a.118.1.14 119671,119672 2ntoA 201 42.47 1qqcA 773 45.54 c.55.3.5,e.8.1.1 33724,43013 3d0cA 314 45.55 1sedA 117 45.90 a.219.1.1 105449 1p4wA 99 48.07 a.4.6.2 87783 2eb2A 334 48.46 1ltqA 301 49.32 c.108.1.9,c.37.1.1 78208,78209 2dtr 226 50.15 2pvqA 201 50.97 1lvaA 258 51.12 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2o09A 189 55.07 1yn9A 169 55.24 1f1eA 154 55.74 a.22.1.2 64927 1m0uA 249 56.37 a.45.1.1,c.47.1.5 78359,78360 2o3fA 111 57.69 2f5xA 312 57.74 1anfA 370 57.84 c.94.1.1 35776 3chhA 336 58.91 3bbyA 215 59.25 2zfoC 147 60.42 1xszA 356 61.02 a.118.3.1,d.129.9.1 116005,116006 3bofA 566 63.73 2rfpA 171 64.42 2qkbA 154 66.05 1lufA 343 66.22 d.144.1.7 78223 1a0fA 201 66.25 a.45.1.1,c.47.1.5 17737,33031 3b2tA 311 66.47 2fuqA 747 67.07 1w07A 659 68.05 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1s7oA 113 68.11 a.4.13.3 105354 2o8xA 70 68.51 1k3yA 221 70.35 a.45.1.1,c.47.1.5 77245,77246 1fw1A 216 71.05 a.45.1.1,c.47.1.5 60051,60052 1n2aA 201 72.04 a.45.1.1,c.47.1.5 91553,91554 1nfpA 228 72.04 c.1.16.2 29555 1x1zA 252 72.13 c.1.2.3 121613 3inkC 133 72.26 a.26.1.2 16881 1x9fA 151 73.28 a.1.1.2 114983 1pp7U 131 73.45 a.4.5.44 94973 3bjdA 332 74.38 2cvdA 198 75.57 a.45.1.1,c.47.1.5 130861,130862 1lrrA 131 76.39 d.228.1.1 78165 1elrA 131 78.22 a.118.8.1 19209 1wdvA 152 78.81 d.116.1.1 114539 1zd8A 227 79.27 1s69A 124 80.23 a.1.1.1 105305 2vc7A 314 83.20 1vz0A 230 84.64 a.4.14.1,d.268.1.1 108929,108930 2oxoA 103 86.09 2q0zX 339 86.35 1k0dA 260 86.55 a.45.1.1,c.47.1.5 67930,67931 1f24A 402 86.83 a.104.1.1 18953 2g3fA 421 86.83 1jl1A 155 86.85 c.55.3.1 66821 2bk9A 153 89.68 2qolA 376 89.71 1j09A 468 89.78 a.97.1.1,c.26.1.1 77025,77026