# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 4.32e-21 3bhqA 211 5.15e-21 3ccyA 203 5.45e-21 1vi0A 206 7.76e-21 a.4.1.9,a.121.1.1 100720,100721 2zb9A 214 1.68e-20 2id6A 202 1.89e-20 1rktA 205 1.91e-20 a.4.1.9,a.121.1.1 97623,97624 3bcgA 215 1.98e-20 3cdlA 203 2.15e-20 1qvtA 194 2.33e-20 a.4.1.9,a.121.1.1 104602,104603 2hyjA 200 2.49e-20 2ibdA 204 2.79e-20 2f07A 197 2.92e-20 2dg7A 195 3.20e-20 2iekA 200 3.25e-20 2g7sA 194 4.32e-20 a.4.1.9,a.121.1.1 134737,134738 3crjA 199 4.70e-20 3c2bA 221 5.38e-20 3b81A 203 5.39e-20 2uxuA 210 5.85e-20 1zkgA 212 6.36e-20 a.4.1.9,a.121.1.1 125194,125195 2fq4A 192 6.45e-20 a.4.1.9,a.121.1.1 133937,133938 1jt6A 188 8.68e-20 a.4.1.9,a.121.1.1 67247,67248 2qtqA 213 9.56e-20 2qcoA 210 1.10e-19 2hytA 197 1.43e-19 2rasA 212 1.46e-19 2genA 197 1.48e-19 a.4.1.9,a.121.1.1 135062,135063 2raeA 207 1.73e-19 3bruA 222 2.04e-19 1z77A 200 2.27e-19 a.4.1.9,a.121.1.1 124588,124589 2of7A 260 2.92e-19 2id3A 225 5.73e-19 a.4.1.9,a.121.1.1 137261,137262 1pb6A 212 6.65e-19 a.4.1.9,a.121.1.1 88017,88018 2zcmA 192 6.73e-19 3colA 196 7.00e-19 1t56A 216 7.97e-19 a.4.1.9,a.121.1.1 106428,106429 3cwrA 208 8.32e-19 2qibA 231 9.02e-19 2jj7A 186 9.69e-19 2iu5A 195 1.11e-18 2o7tA 199 1.36e-18 1ui5A 215 1.49e-18 a.4.1.9,a.121.1.1 107856,107857 2iaiA 230 1.73e-18 2nx4A 194 1.80e-18 2gfnA 209 1.97e-18 a.4.1.9,a.121.1.1 135101,135102 3cjdA 198 2.22e-18 2fx0A 201 2.42e-18 a.4.1.9,a.121.1.1 134269,134270 2vprA 207 3.17e-18 3bniA 229 3.68e-18 1sgmA 191 4.16e-18 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 4.81e-18 a.4.1.9,a.121.1.1 133256,133257 2i10A 202 7.63e-18 a.4.1.9,a.121.1.1 136960,136961 1zk8A 183 7.67e-18 a.4.1.9,a.121.1.1 125177,125178 2g3bA 208 1.10e-17 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 1.30e-17 a.4.1.9,a.121.1.1 138930,138931 2q24A 194 1.54e-17 2d6yA 202 1.56e-17 a.4.1.9,a.121.1.1 131313,131314 2optA 234 1.84e-17 1a6i 217 3.29e-17 2oerA 214 4.39e-17 1t33A 224 4.72e-17 a.4.1.9,a.121.1.1 106295,106296 2qkoA 215 5.00e-17 2tct 207 5.57e-17 2np5A 203 6.25e-17 a.4.1.9,a.121.1.1 138424,138425 3bqyA 209 6.48e-17 2yveA 185 7.51e-17 3bjbA 207 7.96e-17 2g7gA 213 8.76e-17 a.4.1.9,a.121.1.1 134732,134733 2dg8A 193 1.00e-16 2rekA 199 1.41e-16 2fd5A 180 1.78e-16 a.4.1.9,a.121.1.1 133291,133292 2guhA 214 2.50e-16 2oi8A 216 3.65e-16 2eh3A 179 5.72e-16 2qwtA 196 6.99e-16 1z0xA 220 9.95e-16 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 4.33e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 9.46e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.03e-14 2hkuA 215 7.67e-14 2jn6A 97 3.771 2hnlA 225 5.040 1a0p 290 6.141 1wdcC 156 6.499 a.39.1.5 17317 1hlvA 131 6.551 a.4.1.7,a.4.1.7 65854,65855 2on5A 206 7.254 1jlwA 219 7.727 a.45.1.1,c.47.1.5 71741,71742 1ho8A 480 9.520 a.118.1.9 61107 1r9oA 477 10.37 a.104.1.1 104878 1ngkA 128 10.74 a.1.1.1 85673 1g8lA 411 11.31 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2ii0A 490 12.21 a.117.1.1 137425 2rcyA 262 12.40 2pg4A 95 13.08 2ekcA 262 15.55 1xo0A 324 16.32 a.60.9.1,d.163.1.1 115674,115675 1oe8A 211 17.47 a.45.1.1,c.47.1.5 86905,86906 3bkbA 377 17.78 3cblA 377 18.31 1cjgA 62 19.01 a.35.1.5 17112 2pvfA 334 19.57 1nhyA 219 19.58 a.45.1.1,c.47.1.5 80520,80521 2gsqA 202 20.67 a.45.1.1,c.47.1.5 17715,33009 1on2A 142 21.57 a.4.5.24,a.76.1.1 87103,87104 2bjcA 62 24.49 a.35.1.5 128620 1f21A 155 24.51 c.55.3.1 33550 2ahrA 259 24.78 a.100.1.10,c.2.1.6 126775,126776 1vbjA 281 27.07 1zcbA 362 27.09 a.66.1.1,c.37.1.8 124901,124902 1fseA 74 28.08 a.4.6.2 60000 3b6hA 498 30.86 2q88A 257 31.04 2reiA 318 32.50 1fnsA 196 33.03 c.62.1.1 34136 1m48A 133 33.39 a.26.1.2 74443 2a2rA 210 33.80 a.45.1.1,c.47.1.5 126058,126059 2eb2A 334 34.98 1gvfA 286 36.05 c.1.10.2 70599 2fuqA 747 38.31 2dvzA 314 38.38 1ug3A 339 38.56 a.118.1.14,a.118.1.14 119671,119672 2ntoA 201 39.05 2qkbA 154 40.92 2dt5A 211 43.77 a.4.5.38,c.2.1.12 131708,131709 1x1zA 252 44.40 c.1.2.3 121613 1u61A 138 44.48 a.149.1.1 107696 1m0uA 249 45.78 a.45.1.1,c.47.1.5 78359,78360 3c6gA 479 45.86 2v9vA 135 45.93 1nfpA 228 46.46 c.1.16.2 29555 1sedA 117 46.50 a.219.1.1 105449 1f2eA 201 46.50 a.45.1.1,c.47.1.5 17745,33039 2pvqA 201 47.78 2fnaA 357 49.75 a.4.5.11,c.37.1.20 133809,133810 1qqcA 773 50.41 c.55.3.5,e.8.1.1 33724,43013 1yn9A 169 51.90 3b2tA 311 53.53 2o09A 189 53.80 1jpzA 473 54.15 a.104.1.1 67069 3d0cA 314 54.60 1xcbA 211 55.36 a.4.5.38,c.2.1.12 109552,109553 1je8A 82 56.98 a.4.6.2 77108 2zfoC 147 57.63 1zljA 78 57.74 2rfpA 171 60.03 3chhA 336 60.22 2rn7A 108 61.17 1k3yA 221 61.28 a.45.1.1,c.47.1.5 77245,77246 2c1mA 424 61.76 1f1eA 154 63.31 a.22.1.2 64927 2dtr 226 63.60 1ltqA 301 64.31 c.108.1.9,c.37.1.1 78208,78209 2cvdA 198 66.24 a.45.1.1,c.47.1.5 130861,130862 1aw9A 216 68.16 a.45.1.1,c.47.1.5 17736,33030 3bofA 566 69.61 1anfA 370 69.95 c.94.1.1 35776 3bbyA 215 71.24 1fw1A 216 72.09 a.45.1.1,c.47.1.5 60051,60052 1w07A 659 72.48 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1xszA 356 74.14 a.118.3.1,d.129.9.1 116005,116006 1lvaA 258 74.46 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1lufA 343 74.54 d.144.1.7 78223 1a0fA 201 74.97 a.45.1.1,c.47.1.5 17737,33031 1f24A 402 75.72 a.104.1.1 18953 3inkC 133 76.25 a.26.1.2 16881 2gykA 86 77.96 2vc7A 314 78.64 1p4wA 99 80.01 a.4.6.2 87783 1k94A 165 80.80 a.39.1.8 68333 2f5xA 312 80.82 1qhtA 775 81.71 c.55.3.5,e.8.1.1 33722,43011 2dh2A 424 82.35 1jl1A 155 83.86 c.55.3.1 66821 2bk9A 153 84.81 2qolA 376 84.82 1g67A 225 84.84 c.1.3.1 60311 1s69A 124 85.39 a.1.1.1 105305 2o3fA 111 86.12 1x9fA 151 86.62 a.1.1.2 114983