# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.31e-18 3bcgA 215 2.96e-18 2f07A 197 4.41e-18 2uxuA 210 1.01e-17 2hyjA 200 1.12e-17 3ccyA 203 1.32e-17 1vi0A 206 1.52e-17 a.4.1.9,a.121.1.1 100720,100721 3cdlA 203 1.71e-17 3bhqA 211 1.78e-17 2genA 197 2.11e-17 a.4.1.9,a.121.1.1 135062,135063 2ibdA 204 2.18e-17 2g7sA 194 2.75e-17 a.4.1.9,a.121.1.1 134737,134738 2rasA 212 2.87e-17 2qtqA 213 2.95e-17 3b81A 203 3.00e-17 2fq4A 192 3.23e-17 a.4.1.9,a.121.1.1 133937,133938 2dg7A 195 3.97e-17 3bruA 222 4.04e-17 2zb9A 214 4.25e-17 2id6A 202 4.31e-17 3crjA 199 5.04e-17 2iekA 200 8.55e-17 3c2bA 221 9.34e-17 1pb6A 212 1.01e-16 a.4.1.9,a.121.1.1 88017,88018 2id3A 225 1.27e-16 a.4.1.9,a.121.1.1 137261,137262 2hytA 197 1.34e-16 1qvtA 194 1.48e-16 a.4.1.9,a.121.1.1 104602,104603 2of7A 260 1.59e-16 1t56A 216 2.31e-16 a.4.1.9,a.121.1.1 106428,106429 1zkgA 212 2.32e-16 a.4.1.9,a.121.1.1 125194,125195 1rktA 205 2.46e-16 a.4.1.9,a.121.1.1 97623,97624 3cjdA 198 2.61e-16 3colA 196 3.44e-16 1z77A 200 3.72e-16 a.4.1.9,a.121.1.1 124588,124589 2jj7A 186 3.99e-16 2fx0A 201 4.83e-16 a.4.1.9,a.121.1.1 134269,134270 2iaiA 230 4.95e-16 1jt6A 188 4.99e-16 a.4.1.9,a.121.1.1 67247,67248 1sgmA 191 5.27e-16 a.4.1.9,a.121.1.1 105537,105538 2qcoA 210 5.46e-16 2o7tA 199 6.56e-16 3cwrA 208 6.79e-16 2qibA 231 7.12e-16 2raeA 207 7.31e-16 2gfnA 209 8.85e-16 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 1.39e-15 2d6yA 202 2.77e-15 a.4.1.9,a.121.1.1 131313,131314 2i10A 202 3.09e-15 a.4.1.9,a.121.1.1 136960,136961 2zcmA 192 3.09e-15 2fbqA 235 3.52e-15 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 4.94e-15 a.4.1.9,a.121.1.1 107856,107857 2g3bA 208 5.12e-15 a.4.1.9,a.121.1.1 134558,134559 1zk8A 183 5.96e-15 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 7.37e-15 2q24A 194 8.67e-15 2iu5A 195 1.30e-14 2oerA 214 1.63e-14 1t33A 224 2.07e-14 a.4.1.9,a.121.1.1 106295,106296 2vprA 207 2.42e-14 2np5A 203 3.15e-14 a.4.1.9,a.121.1.1 138424,138425 1a6i 217 4.39e-14 2dg8A 193 4.61e-14 2qwtA 196 6.06e-14 2guhA 214 6.30e-14 2optA 234 6.82e-14 2rekA 199 7.15e-14 3bjbA 207 7.35e-14 2o7oA 207 7.97e-14 a.4.1.9,a.121.1.1 138930,138931 3bqyA 209 1.01e-13 2fd5A 180 1.10e-13 a.4.1.9,a.121.1.1 133291,133292 2yveA 185 1.30e-13 2eh3A 179 2.27e-13 2qkoA 215 2.85e-13 2tct 207 4.44e-13 1z0xA 220 5.17e-13 a.4.1.9,a.121.1.1 124334,124335 2g7gA 213 6.54e-13 a.4.1.9,a.121.1.1 134732,134733 1v7bA 185 7.11e-13 a.4.1.9,a.121.1.1 119861,119862 2oi8A 216 7.84e-13 2g7lA 243 1.76e-12 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 2.11e-11 2hkuA 215 2.29e-11 2on5A 206 3.155 3bbyA 215 3.694 2gsqA 202 5.148 a.45.1.1,c.47.1.5 17715,33009 2hnlA 225 14.12 1fw1A 216 15.53 a.45.1.1,c.47.1.5 60051,60052 1jlwA 219 16.83 a.45.1.1,c.47.1.5 71741,71742 2imiA 221 19.21 1jlvA 209 20.08 a.45.1.1,c.47.1.5 71729,71730 2jn6A 97 20.60 1hlvA 131 23.91 a.4.1.7,a.4.1.7 65854,65855 1oe8A 211 25.66 a.45.1.1,c.47.1.5 86905,86906 1ltqA 301 26.77 c.108.1.9,c.37.1.1 78208,78209 2a2rA 210 26.91 a.45.1.1,c.47.1.5 126058,126059 1ciyA 590 28.17 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1tu7A 208 30.15 a.45.1.1,c.47.1.5 112653,112654 2ntoA 201 32.82 2cz2A 223 34.67 2pg4A 95 35.34 1uwkA 557 35.69 e.51.1.1 108065 3cbuA 214 36.12 1edg 380 40.13 1zdyA 307 46.27 d.313.1.1 124961 1ho8A 480 46.73 a.118.1.9 61107 1ciy 590 47.87 1htyA 1015 50.96 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1v2aA 210 52.88 a.45.1.1,c.47.1.5 100263,100264 2pzzA 147 56.39 1ug3A 339 59.81 a.118.1.14,a.118.1.14 119671,119672 2oi2A 292 60.35 2pvqA 201 61.03 1pgtA 210 61.72 a.45.1.1,c.47.1.5 17515,32809 1ex2A 189 62.15 c.51.4.2 33225 1m0uA 249 65.97 a.45.1.1,c.47.1.5 78359,78360 1pp7U 131 68.68 a.4.5.44 94973 1cjgA 62 68.69 a.35.1.5 17112 2cvdA 198 70.28 a.45.1.1,c.47.1.5 130861,130862 1yq2A 1024 73.63 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 123843,123844,123845,123846,123847 1ijbA 202 74.55 c.62.1.1 71229 2q0zX 339 75.84 1a0p 290 77.38 1mqiA 263 80.14 c.94.1.1 91398 2q88A 257 81.91 1a4mA 349 82.98 c.1.9.1 29014 1lbkA 208 83.61 a.45.1.1,c.47.1.5 73809,73810 2rn7A 108 84.18 1anfA 370 84.28 c.94.1.1 35776 1k3yA 221 84.84 a.45.1.1,c.47.1.5 77245,77246 1f2eA 201 86.05 a.45.1.1,c.47.1.5 17745,33039 1uuqA 440 86.60 c.1.8.3 100015 2oxoA 103 87.66 1ny1A 240 87.77 c.6.2.3 86395 1w1iE 357 87.90 c.1.9.1 109051