# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 6.85e-21 3ccyA 203 1.61e-20 1vi0A 206 1.85e-20 a.4.1.9,a.121.1.1 100720,100721 3bcgA 215 2.94e-20 2ibdA 204 4.07e-20 2f07A 197 4.46e-20 2uxuA 210 5.96e-20 2id6A 202 7.22e-20 2iekA 200 7.76e-20 3bhqA 211 7.93e-20 2g7sA 194 9.12e-20 a.4.1.9,a.121.1.1 134737,134738 1rktA 205 1.13e-19 a.4.1.9,a.121.1.1 97623,97624 3crjA 199 1.21e-19 1qvtA 194 1.22e-19 a.4.1.9,a.121.1.1 104602,104603 2hyjA 200 1.23e-19 2rasA 212 1.25e-19 2dg7A 195 1.46e-19 2qtqA 213 1.52e-19 3b81A 203 1.80e-19 3cdlA 203 2.15e-19 3bruA 222 2.20e-19 2fq4A 192 2.31e-19 a.4.1.9,a.121.1.1 133937,133938 2zb9A 214 2.78e-19 3c2bA 221 2.83e-19 2hytA 197 3.09e-19 2genA 197 3.27e-19 a.4.1.9,a.121.1.1 135062,135063 1pb6A 212 3.76e-19 a.4.1.9,a.121.1.1 88017,88018 1jt6A 188 5.27e-19 a.4.1.9,a.121.1.1 67247,67248 2raeA 207 7.41e-19 1zkgA 212 7.49e-19 a.4.1.9,a.121.1.1 125194,125195 2qcoA 210 7.71e-19 3colA 196 8.87e-19 1z77A 200 9.25e-19 a.4.1.9,a.121.1.1 124588,124589 2jj7A 186 1.14e-18 2id3A 225 1.15e-18 a.4.1.9,a.121.1.1 137261,137262 3cwrA 208 1.71e-18 2zcmA 192 1.75e-18 1t56A 216 1.85e-18 a.4.1.9,a.121.1.1 106428,106429 1ui5A 215 1.88e-18 a.4.1.9,a.121.1.1 107856,107857 2iaiA 230 2.69e-18 2fx0A 201 2.87e-18 a.4.1.9,a.121.1.1 134269,134270 3cjdA 198 2.98e-18 2qibA 231 3.06e-18 2of7A 260 3.58e-18 2iu5A 195 4.41e-18 2o7tA 199 4.76e-18 2d6yA 202 5.09e-18 a.4.1.9,a.121.1.1 131313,131314 2fbqA 235 5.11e-18 a.4.1.9,a.121.1.1 133256,133257 1sgmA 191 5.57e-18 a.4.1.9,a.121.1.1 105537,105538 2gfnA 209 7.95e-18 a.4.1.9,a.121.1.1 135101,135102 2vprA 207 9.23e-18 2q24A 194 9.33e-18 2nx4A 194 9.82e-18 1zk8A 183 1.32e-17 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 1.51e-17 2i10A 202 2.80e-17 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 3.67e-17 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 3.95e-17 a.4.1.9,a.121.1.1 138930,138931 2optA 234 5.62e-17 1a6i 217 6.11e-17 2dg8A 193 6.85e-17 3bjbA 207 7.11e-17 3bqyA 209 7.57e-17 2yveA 185 9.00e-17 1t33A 224 9.50e-17 a.4.1.9,a.121.1.1 106295,106296 2guhA 214 1.32e-16 2qkoA 215 1.49e-16 2rekA 199 1.80e-16 2tct 207 2.10e-16 2np5A 203 2.14e-16 a.4.1.9,a.121.1.1 138424,138425 2g7gA 213 3.06e-16 a.4.1.9,a.121.1.1 134732,134733 2oerA 214 3.43e-16 2oi8A 216 6.43e-16 2qwtA 196 7.12e-16 2fd5A 180 7.32e-16 a.4.1.9,a.121.1.1 133291,133292 2eh3A 179 1.20e-15 1z0xA 220 2.05e-15 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 7.93e-15 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 3.19e-14 2g7lA 243 3.51e-14 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 1.32e-13 1hlvA 131 1.974 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 2.610 1a0p 290 3.535 2on5A 206 5.621 2pg4A 95 7.861 1lvaA 258 8.350 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2dt5A 211 10.14 a.4.5.38,c.2.1.12 131708,131709 1vbjA 281 10.44 1j09A 468 10.72 a.97.1.1,c.26.1.1 77025,77026 1jlwA 219 11.77 a.45.1.1,c.47.1.5 71741,71742 2v9vA 135 11.78 1on2A 142 13.03 a.4.5.24,a.76.1.1 87103,87104 1g8lA 411 13.44 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2rcyA 262 13.55 1xcbA 211 13.67 a.4.5.38,c.2.1.12 109552,109553 3c6gA 479 14.43 1m48A 133 14.75 a.26.1.2 74443 2ekcA 262 15.55 2hnlA 225 15.72 3bbyA 215 16.28 1cjgA 62 18.27 a.35.1.5 17112 2rn7A 108 18.53 1wdcC 156 19.71 a.39.1.5 17317 3bkbA 377 21.70 1xo0A 324 25.19 a.60.9.1,d.163.1.1 115674,115675 2r8wA 332 27.39 3cblA 377 28.63 1qqcA 773 29.90 c.55.3.5,e.8.1.1 33724,43013 2bjcA 62 30.51 a.35.1.5 128620 1f1eA 154 31.89 a.22.1.2 64927 2o09A 189 31.94 1sedA 117 35.62 a.219.1.1 105449 1nhyA 219 35.81 a.45.1.1,c.47.1.5 80520,80521 1fseA 74 37.01 a.4.6.2 60000 1m5yA 408 37.08 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1f21A 155 37.10 c.55.3.1 33550 2dtr 226 37.51 1fnsA 196 37.65 c.62.1.1 34136 2biiA 424 38.14 2ii0A 490 38.19 a.117.1.1 137425 2fnaA 357 39.16 a.4.5.11,c.37.1.20 133809,133810 1ltqA 301 40.42 c.108.1.9,c.37.1.1 78208,78209 3cbuA 214 41.60 2o3fA 111 43.19 2eb2A 334 43.68 1xsvA 113 48.42 a.4.13.3 116003 1f2eA 201 51.79 a.45.1.1,c.47.1.5 17745,33039 1zljA 78 52.52 2ghaA 382 52.73 1r9oA 477 53.11 a.104.1.1 104878 1anfA 370 54.80 c.94.1.1 35776 1jlvA 209 55.29 a.45.1.1,c.47.1.5 71729,71730 1fw1A 216 58.01 a.45.1.1,c.47.1.5 60051,60052 2pvfA 334 58.73 1sfxA 109 60.00 a.4.5.50 105505 1je8A 82 60.39 a.4.6.2 77108 1s1iG 119 61.11 i.1.1.1 105181 2reiA 318 61.82 1ho8A 480 61.88 a.118.1.9 61107 1wgzA 510 62.29 3bofA 566 62.88 2qguA 211 63.02 2q88A 257 65.68 2dh2A 424 66.23 3inkC 133 66.52 a.26.1.2 16881 1oqyA 368 70.75 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1x1zA 252 71.90 c.1.2.3 121613 1lufA 343 73.30 d.144.1.7 78223 1lrrA 131 73.69 d.228.1.1 78165 2hiqA 113 75.20 d.58.4.12 136529 1ct5A 256 75.63 c.1.6.2 28663 1wtyA 119 76.81 a.24.16.2 114880 1a0fA 201 77.69 a.45.1.1,c.47.1.5 17737,33031 2pl2A 217 78.43 1n2aA 201 78.72 a.45.1.1,c.47.1.5 91553,91554 1wdvA 152 79.84 d.116.1.1 114539 1yn9A 169 80.70 2cx5A 158 81.57 1gkzA 388 84.10 a.29.5.1,d.122.1.4 65268,65269 4crxA 322 86.04 a.60.9.1,d.163.1.1 18095,42155 1s7oA 113 86.13 a.4.13.3 105354 2dfwA 396 86.84 2aucA 126 87.08 2gsqA 202 87.33 a.45.1.1,c.47.1.5 17715,33009 2fncA 381 87.69 2hoqA 241 88.83 2dvzA 314 88.96 2e9xD 223 89.12