# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 6.15e-25 3bcgA 215 5.51e-24 3ccyA 203 6.11e-24 1vi0A 206 7.09e-24 a.4.1.9,a.121.1.1 100720,100721 2ibdA 204 1.32e-23 3bhqA 211 1.82e-23 2f07A 197 2.06e-23 3cdlA 203 2.35e-23 2uxuA 210 2.93e-23 2id6A 202 3.44e-23 2g7sA 194 4.10e-23 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 4.27e-23 a.4.1.9,a.121.1.1 104602,104603 2iekA 200 4.50e-23 2hyjA 200 5.32e-23 2rasA 212 6.23e-23 1rktA 205 6.32e-23 a.4.1.9,a.121.1.1 97623,97624 3crjA 199 7.12e-23 3b81A 203 9.62e-23 2qtqA 213 9.79e-23 2dg7A 195 9.99e-23 3c2bA 221 1.16e-22 3bruA 222 1.33e-22 2zb9A 214 1.43e-22 2genA 197 1.51e-22 a.4.1.9,a.121.1.1 135062,135063 2fq4A 192 1.63e-22 a.4.1.9,a.121.1.1 133937,133938 1pb6A 212 1.68e-22 a.4.1.9,a.121.1.1 88017,88018 2hytA 197 1.74e-22 2id3A 225 2.85e-22 a.4.1.9,a.121.1.1 137261,137262 1jt6A 188 3.32e-22 a.4.1.9,a.121.1.1 67247,67248 2raeA 207 5.72e-22 2jj7A 186 5.96e-22 1zkgA 212 6.07e-22 a.4.1.9,a.121.1.1 125194,125195 2qcoA 210 7.25e-22 1z77A 200 8.16e-22 a.4.1.9,a.121.1.1 124588,124589 1t56A 216 1.04e-21 a.4.1.9,a.121.1.1 106428,106429 3colA 196 1.26e-21 2zcmA 192 1.66e-21 2qibA 231 1.69e-21 2of7A 260 1.69e-21 2o7tA 199 2.00e-21 3cwrA 208 2.01e-21 1ui5A 215 2.55e-21 a.4.1.9,a.121.1.1 107856,107857 2fbqA 235 2.90e-21 a.4.1.9,a.121.1.1 133256,133257 2iaiA 230 2.96e-21 2iu5A 195 3.17e-21 2fx0A 201 3.36e-21 a.4.1.9,a.121.1.1 134269,134270 3cjdA 198 4.71e-21 2gfnA 209 8.16e-21 a.4.1.9,a.121.1.1 135101,135102 1sgmA 191 9.43e-21 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 1.20e-20 a.4.1.9,a.121.1.1 131313,131314 2q24A 194 1.23e-20 2nx4A 194 1.28e-20 2vprA 207 1.81e-20 2g3bA 208 1.86e-20 a.4.1.9,a.121.1.1 134558,134559 1zk8A 183 2.34e-20 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 2.69e-20 2i10A 202 3.08e-20 a.4.1.9,a.121.1.1 136960,136961 2o7oA 207 6.93e-20 a.4.1.9,a.121.1.1 138930,138931 3bjbA 207 8.67e-20 3bqyA 209 1.16e-19 2optA 234 1.34e-19 1a6i 217 2.06e-19 1t33A 224 2.26e-19 a.4.1.9,a.121.1.1 106295,106296 2dg8A 193 2.46e-19 2yveA 185 2.83e-19 2rekA 199 3.82e-19 2np5A 203 5.89e-19 a.4.1.9,a.121.1.1 138424,138425 2guhA 214 5.92e-19 2qkoA 215 6.05e-19 2oerA 214 6.21e-19 2tct 207 7.32e-19 2qwtA 196 9.62e-19 2g7gA 213 1.19e-18 a.4.1.9,a.121.1.1 134732,134733 2fd5A 180 3.94e-18 a.4.1.9,a.121.1.1 133291,133292 1z0xA 220 4.43e-18 a.4.1.9,a.121.1.1 124334,124335 2eh3A 179 4.45e-18 2oi8A 216 4.55e-18 1v7bA 185 4.72e-17 a.4.1.9,a.121.1.1 119861,119862 2hxoA 237 3.08e-16 2g7lA 243 3.59e-16 a.4.1.9,a.121.1.1 134734,134735 2hkuA 215 1.00e-15 1hlvA 131 1.097 a.4.1.7,a.4.1.7 65854,65855 1jlwA 219 2.014 a.45.1.1,c.47.1.5 71741,71742 3c6gA 479 2.536 2jn6A 97 2.837 2on5A 206 4.172 2dg6A 222 5.780 3bofA 566 5.893 2fnaA 357 6.059 a.4.5.11,c.37.1.20 133809,133810 1on2A 142 7.517 a.4.5.24,a.76.1.1 87103,87104 1lvaA 258 8.125 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1zejA 293 8.430 2e9xD 223 8.432 2pg4A 95 9.048 2dt5A 211 9.774 a.4.5.38,c.2.1.12 131708,131709 2scpA 174 9.782 a.39.1.5 17256 2hoqA 241 9.96 1qqcA 773 10.53 c.55.3.5,e.8.1.1 33724,43013 2f1sA 186 13.11 2v9vA 135 13.22 2vg2A 284 14.12 2fncA 381 14.14 2og2A 359 15.51 3b6hA 498 16.42 1xd3A 230 17.00 d.3.1.6 115145 2hnlA 225 17.02 2gsqA 202 17.69 a.45.1.1,c.47.1.5 17715,33009 1riiA 265 17.86 c.60.1.1 111807 2rcyA 262 18.21 2o09A 189 18.28 1m48A 133 18.65 a.26.1.2 74443 1phkA 298 18.65 d.144.1.7 41635 1d0cA 444 18.74 d.174.1.1 64769 1wdcC 156 20.07 a.39.1.5 17317 1zcbA 362 20.81 a.66.1.1,c.37.1.8 124901,124902 2ghaA 382 21.50 2pzzA 147 22.30 1cjgA 62 22.97 a.35.1.5 17112 1r9oA 477 24.49 a.104.1.1 104878 1ho8A 480 24.60 a.118.1.9 61107 1y1xA 191 25.98 a.39.1.8 116374 1nq7A 244 27.01 a.123.1.1 92047 3cblA 377 27.23 2qguA 211 27.44 1xsvA 113 28.61 a.4.13.3 116003 1jlvA 209 29.52 a.45.1.1,c.47.1.5 71729,71730 1q06A 135 29.65 a.6.1.3 95493 2pftA 571 31.52 2jfkA 433 32.21 1fnsA 196 32.54 c.62.1.1 34136 1sedA 117 32.75 a.219.1.1 105449 1m7vA 363 33.20 d.174.1.1 78748 1qs0A 407 34.04 c.36.1.11 31829 2bjcA 62 34.31 a.35.1.5 128620 2ptzA 432 35.66 1qrrA 394 36.76 c.2.1.2 29824 1gnwA 211 36.80 a.45.1.1,c.47.1.5 17727,33021 2eb2A 334 37.48 3c4zA 543 37.90 1fseA 74 38.74 a.4.6.2 60000 2ab5A 269 39.74 1lufA 343 40.93 d.144.1.7 78223 1xo0A 324 41.92 a.60.9.1,d.163.1.1 115674,115675 1el4A 195 42.37 a.39.1.5 59453 1y9aA 360 43.39 1m0uA 249 44.56 a.45.1.1,c.47.1.5 78359,78360 2c5uA 375 45.78 2ia2A 265 48.85 1wgzA 510 49.77 1z6gA 218 49.81 1s7oA 113 50.00 a.4.13.3 105354 2a2rA 210 50.10 a.45.1.1,c.47.1.5 126058,126059 1j32A 388 50.36 c.67.1.1 77067 3bbyA 215 50.42 1ckeA 227 50.68 c.37.1.1 31846 2o3fA 111 50.98 2r8wA 332 51.13 1eu8A 409 51.14 c.94.1.1 59502 1f1eA 154 51.31 a.22.1.2 64927 2pvfA 334 52.64 2yzqA 282 52.72 1uehA 253 53.27 c.101.1.1 99259 1wtyA 119 53.52 a.24.16.2 114880 1ydnA 295 53.66 1m65A 245 53.90 c.6.3.1 84847 2jabA 136 54.79 1oqyA 368 56.53 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1g6aA 271 57.49 e.3.1.1 42704 1sfxA 109 57.91 a.4.5.50 105505 1zljA 78 59.30 1ia8A 289 60.57 d.144.1.7 62112 1mhyD 521 60.59 a.25.1.2 16780 1f21A 155 61.80 c.55.3.1 33550 1a0dA 440 62.03 c.1.15.3 29533 1e6yB 433 62.82 a.89.1.1,d.58.31.2 18535,39453 2bmbA 545 62.89 1j6pA 418 64.52 b.92.1.4,c.1.9.9 77089,77090 1ed5A 444 65.65 d.174.1.1 42530 1mqiA 263 66.19 c.94.1.1 91398 2aqwA 332 68.46 c.1.2.3 127184 1rpnA 335 68.72 c.2.1.2 97708 2bbrA 195 69.78 8abpA 306 70.28 c.93.1.1 35647 1a0p 290 74.38 2jfuA 291 74.76 1k77A 260 74.76 c.1.15.5 72096 1ciyA 590 75.29 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 3b2tA 311 75.72 2bptA 861 77.30 a.118.1.1 128951 1n2aA 201 78.00 a.45.1.1,c.47.1.5 91553,91554 1bgpA 309 79.53 a.93.1.1 18690 2hnhA 910 80.22 1zarA 282 80.88 a.4.5.56,d.144.1.9 124843,124844 2qpqA 301 81.72 1gkzA 388 81.77 a.29.5.1,d.122.1.4 65268,65269 2yr1A 257 81.80 1c4zA 358 82.55 d.148.1.1 41766 1zd1A 284 82.98 1kewA 361 83.78 c.2.1.2 68544 2ekcA 262 84.65 1f6yA 262 84.69 c.1.21.2 29673 1ytvA 366 85.32 c.94.1.1 124016 1vz0A 230 85.39 a.4.14.1,d.268.1.1 108929,108930 1axdA 209 86.30 a.45.1.1,c.47.1.5 17730,33024 2pi6A 361 86.41 1fc6A 388 86.54 b.36.1.3,c.14.1.2 64738,64739 2dtr 226 87.24 1lrrA 131 88.88 d.228.1.1 78165 1pcxA 810 89.14 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 94497,94498,94499,94500,94501 1womA 271 89.32