# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 9.80e-21 3ccyA 203 2.43e-20 1vi0A 206 2.84e-20 a.4.1.9,a.121.1.1 100720,100721 3bcgA 215 3.78e-20 2ibdA 204 6.72e-20 3bhqA 211 6.94e-20 2f07A 197 6.98e-20 2uxuA 210 7.34e-20 2id6A 202 7.91e-20 2iekA 200 9.21e-20 2g7sA 194 1.33e-19 a.4.1.9,a.121.1.1 134737,134738 1rktA 205 1.37e-19 a.4.1.9,a.121.1.1 97623,97624 1qvtA 194 1.42e-19 a.4.1.9,a.121.1.1 104602,104603 3crjA 199 1.58e-19 2hyjA 200 1.64e-19 2qtqA 213 1.69e-19 2rasA 212 1.87e-19 3b81A 203 2.05e-19 2dg7A 195 2.07e-19 2fq4A 192 2.80e-19 a.4.1.9,a.121.1.1 133937,133938 3bruA 222 2.96e-19 3cdlA 203 3.04e-19 3c2bA 221 3.13e-19 2zb9A 214 3.51e-19 2genA 197 4.37e-19 a.4.1.9,a.121.1.1 135062,135063 2hytA 197 4.38e-19 1pb6A 212 5.54e-19 a.4.1.9,a.121.1.1 88017,88018 1jt6A 188 6.10e-19 a.4.1.9,a.121.1.1 67247,67248 1zkgA 212 7.22e-19 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 1.05e-18 a.4.1.9,a.121.1.1 124588,124589 2qcoA 210 1.06e-18 2raeA 207 1.11e-18 2jj7A 186 1.26e-18 3colA 196 1.39e-18 2id3A 225 1.62e-18 a.4.1.9,a.121.1.1 137261,137262 2zcmA 192 2.43e-18 3cwrA 208 2.51e-18 1t56A 216 2.74e-18 a.4.1.9,a.121.1.1 106428,106429 2iaiA 230 3.09e-18 2of7A 260 3.25e-18 1ui5A 215 3.38e-18 a.4.1.9,a.121.1.1 107856,107857 2qibA 231 3.69e-18 2fx0A 201 3.76e-18 a.4.1.9,a.121.1.1 134269,134270 3cjdA 198 4.38e-18 2fbqA 235 5.23e-18 a.4.1.9,a.121.1.1 133256,133257 2o7tA 199 5.80e-18 2iu5A 195 6.11e-18 1sgmA 191 6.98e-18 a.4.1.9,a.121.1.1 105537,105538 2d6yA 202 1.01e-17 a.4.1.9,a.121.1.1 131313,131314 2vprA 207 1.01e-17 2gfnA 209 1.02e-17 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 1.16e-17 2q24A 194 1.19e-17 1zk8A 183 1.78e-17 a.4.1.9,a.121.1.1 125177,125178 3bniA 229 1.98e-17 2i10A 202 2.84e-17 a.4.1.9,a.121.1.1 136960,136961 2o7oA 207 4.92e-17 a.4.1.9,a.121.1.1 138930,138931 2g3bA 208 5.07e-17 a.4.1.9,a.121.1.1 134558,134559 2optA 234 6.08e-17 1a6i 217 6.69e-17 2yveA 185 9.48e-17 3bjbA 207 9.96e-17 3bqyA 209 1.04e-16 1t33A 224 1.25e-16 a.4.1.9,a.121.1.1 106295,106296 2dg8A 193 1.30e-16 2qkoA 215 1.85e-16 2guhA 214 2.16e-16 2rekA 199 2.31e-16 2tct 207 2.67e-16 2np5A 203 2.82e-16 a.4.1.9,a.121.1.1 138424,138425 2oerA 214 3.77e-16 2g7gA 213 3.90e-16 a.4.1.9,a.121.1.1 134732,134733 2qwtA 196 8.36e-16 2fd5A 180 9.29e-16 a.4.1.9,a.121.1.1 133291,133292 2oi8A 216 9.47e-16 2eh3A 179 1.67e-15 1z0xA 220 1.74e-15 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 6.90e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 4.33e-14 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 4.60e-14 2hkuA 215 2.00e-13 1hlvA 131 1.045 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 1.955 1a0p 290 4.279 2pg4A 95 6.500 2on5A 206 7.236 1g8lA 411 7.797 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2ekcA 262 9.140 2hnlA 225 10.34 2dt5A 211 10.55 a.4.5.38,c.2.1.12 131708,131709 3c6gA 479 12.11 2rn7A 108 12.13 1jlwA 219 12.34 a.45.1.1,c.47.1.5 71741,71742 1lvaA 258 12.39 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1wdcC 156 13.05 a.39.1.5 17317 1vbjA 281 13.36 1j09A 468 14.86 a.97.1.1,c.26.1.1 77025,77026 1cjgA 62 15.50 a.35.1.5 17112 1m48A 133 16.38 a.26.1.2 74443 3bbyA 215 16.94 2rcyA 262 17.07 1on2A 142 19.52 a.4.5.24,a.76.1.1 87103,87104 2v9vA 135 19.66 1xo0A 324 22.21 a.60.9.1,d.163.1.1 115674,115675 1xcbA 211 22.51 a.4.5.38,c.2.1.12 109552,109553 3bkbA 377 22.74 1fseA 74 26.64 a.4.6.2 60000 1fnsA 196 27.62 c.62.1.1 34136 2dh2A 424 29.89 2ii0A 490 30.20 a.117.1.1 137425 2r8wA 332 30.66 1xsvA 113 33.12 a.4.13.3 116003 2o3fA 111 34.52 1je8A 82 34.93 a.4.6.2 77108 2o09A 189 38.10 1zljA 78 38.32 1ltqA 301 39.25 c.108.1.9,c.37.1.1 78208,78209 2bjcA 62 40.94 a.35.1.5 128620 1qqcA 773 42.09 c.55.3.5,e.8.1.1 33724,43013 2fnaA 357 42.51 a.4.5.11,c.37.1.20 133809,133810 1s7oA 113 43.09 a.4.13.3 105354 1sedA 117 44.07 a.219.1.1 105449 3bofA 566 44.61 3cblA 377 44.63 1ct5A 256 45.69 c.1.6.2 28663 3cbuA 214 46.83 1nhyA 219 47.83 a.45.1.1,c.47.1.5 80520,80521 1m5yA 408 48.22 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1f21A 155 48.25 c.55.3.1 33550 2eb2A 334 48.66 1f1eA 154 49.29 a.22.1.2 64927 1uz5A 402 53.79 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1ijbA 202 54.00 c.62.1.1 71229 1f2eA 201 55.94 a.45.1.1,c.47.1.5 17745,33039 1zcbA 362 56.62 a.66.1.1,c.37.1.8 124901,124902 1jlvA 209 57.03 a.45.1.1,c.47.1.5 71729,71730 2pvfA 334 58.15 1lufA 343 59.06 d.144.1.7 78223 2dtr 226 59.49 2qguA 211 60.36 2reiA 318 61.29 1ho8A 480 62.56 a.118.1.9 61107 2g3fA 421 63.12 1sfxA 109 64.70 a.4.5.50 105505 1anfA 370 65.96 c.94.1.1 35776 3inkC 133 67.82 a.26.1.2 16881 1lrrA 131 68.29 d.228.1.1 78165 1wtyA 119 70.62 a.24.16.2 114880 2hiqA 113 72.40 d.58.4.12 136529 2ghaA 382 73.66 4crxA 322 75.85 a.60.9.1,d.163.1.1 18095,42155 1p4wA 99 76.49 a.4.6.2 87783 1fw1A 216 77.15 a.45.1.1,c.47.1.5 60051,60052 2q88A 257 77.45 2qolA 376 77.87 1a0fA 201 78.55 a.45.1.1,c.47.1.5 17737,33031 1gkzA 388 79.20 a.29.5.1,d.122.1.4 65268,65269 1n2aA 201 80.87 a.45.1.1,c.47.1.5 91553,91554 2dvzA 314 82.12 1s1iG 119 82.50 i.1.1.1 105181 1wgzA 510 82.95 2nqrA 411 83.04 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 1r9oA 477 83.21 a.104.1.1 104878 1ckeA 227 84.54 c.37.1.1 31846 1s50A 259 85.59 c.94.1.1 118864 1s69A 124 85.95 a.1.1.1 105305 3b2tA 311 86.20