# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bcgA 215 5.33e-24 2pbxA 203 5.88e-24 3ccyA 203 1.65e-23 1vi0A 206 2.73e-23 a.4.1.9,a.121.1.1 100720,100721 3bhqA 211 2.92e-23 2uxuA 210 3.71e-23 2zb9A 214 3.95e-23 2dg7A 195 4.47e-23 2ibdA 204 5.43e-23 2f07A 197 6.16e-23 2hyjA 200 7.08e-23 2iekA 200 1.10e-22 1rktA 205 1.16e-22 a.4.1.9,a.121.1.1 97623,97624 3b81A 203 1.18e-22 2g7sA 194 1.28e-22 a.4.1.9,a.121.1.1 134737,134738 3cdlA 203 1.28e-22 2id6A 202 1.30e-22 2rasA 212 1.36e-22 2genA 197 1.37e-22 a.4.1.9,a.121.1.1 135062,135063 3crjA 199 1.49e-22 2fq4A 192 1.65e-22 a.4.1.9,a.121.1.1 133937,133938 1qvtA 194 2.04e-22 a.4.1.9,a.121.1.1 104602,104603 2qtqA 213 2.50e-22 3c2bA 221 2.84e-22 2raeA 207 2.94e-22 3bruA 222 3.60e-22 3cjdA 198 3.66e-22 2of7A 260 6.79e-22 2hytA 197 6.82e-22 1jt6A 188 8.96e-22 a.4.1.9,a.121.1.1 67247,67248 2qcoA 210 1.14e-21 1z77A 200 1.16e-21 a.4.1.9,a.121.1.1 124588,124589 1zkgA 212 1.16e-21 a.4.1.9,a.121.1.1 125194,125195 1pb6A 212 1.40e-21 a.4.1.9,a.121.1.1 88017,88018 3colA 196 2.11e-21 1t56A 216 2.23e-21 a.4.1.9,a.121.1.1 106428,106429 2zcmA 192 2.38e-21 2id3A 225 2.63e-21 a.4.1.9,a.121.1.1 137261,137262 3cwrA 208 2.97e-21 2jj7A 186 3.36e-21 2iaiA 230 4.48e-21 2nx4A 194 4.74e-21 2o7tA 199 5.71e-21 2qibA 231 5.88e-21 2iu5A 195 5.92e-21 2gfnA 209 7.15e-21 a.4.1.9,a.121.1.1 135101,135102 2fbqA 235 7.73e-21 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 9.26e-21 a.4.1.9,a.121.1.1 107856,107857 1sgmA 191 1.01e-20 a.4.1.9,a.121.1.1 105537,105538 2fx0A 201 1.67e-20 a.4.1.9,a.121.1.1 134269,134270 2i10A 202 3.24e-20 a.4.1.9,a.121.1.1 136960,136961 2o7oA 207 4.34e-20 a.4.1.9,a.121.1.1 138930,138931 2d6yA 202 4.64e-20 a.4.1.9,a.121.1.1 131313,131314 1zk8A 183 5.16e-20 a.4.1.9,a.121.1.1 125177,125178 2q24A 194 5.39e-20 2vprA 207 5.56e-20 3bniA 229 6.07e-20 1a6i 217 1.04e-19 2g3bA 208 1.47e-19 a.4.1.9,a.121.1.1 134558,134559 2dg8A 193 1.86e-19 2optA 234 2.36e-19 2oerA 214 2.95e-19 3bqyA 209 3.48e-19 1t33A 224 3.53e-19 a.4.1.9,a.121.1.1 106295,106296 2qkoA 215 4.51e-19 3bjbA 207 4.91e-19 2guhA 214 5.09e-19 2np5A 203 5.77e-19 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 6.43e-19 2tct 207 9.17e-19 2g7gA 213 1.16e-18 a.4.1.9,a.121.1.1 134732,134733 2rekA 199 1.93e-18 2qwtA 196 2.68e-18 2oi8A 216 5.07e-18 2fd5A 180 6.55e-18 a.4.1.9,a.121.1.1 133291,133292 2eh3A 179 7.56e-18 1z0xA 220 1.13e-17 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 2.98e-17 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.43e-16 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 7.30e-16 2hkuA 215 1.62e-15 1hlvA 131 2.240 a.4.1.7,a.4.1.7 65854,65855 2jn6A 97 3.673 2hnlA 225 4.920 2on5A 206 5.036 2dtr 226 5.092 1on2A 142 6.477 a.4.5.24,a.76.1.1 87103,87104 1a0p 290 7.756 2ekcA 262 8.064 1wdcC 156 11.44 a.39.1.5 17317 1jlwA 219 12.65 a.45.1.1,c.47.1.5 71741,71742 1m48A 133 14.31 a.26.1.2 74443 2r8wA 332 16.73 2rfpA 171 17.83 2eb2A 334 18.38 3c6gA 479 18.74 1g8lA 411 19.07 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2pg4A 95 19.17 1j09A 468 20.06 a.97.1.1,c.26.1.1 77025,77026 1m0uA 249 20.15 a.45.1.1,c.47.1.5 78359,78360 3bkbA 377 22.92 1x1zA 252 23.06 c.1.2.3 121613 1s1iG 119 23.87 i.1.1.1 105181 1oqyA 368 25.04 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2aamA 309 27.20 c.1.8.15 126489 2rn7A 108 27.25 2a2rA 210 27.85 a.45.1.1,c.47.1.5 126058,126059 1qqcA 773 28.05 c.55.3.5,e.8.1.1 33724,43013 2rcyA 262 29.01 2gsqA 202 30.92 a.45.1.1,c.47.1.5 17715,33009 2fnaA 357 32.13 a.4.5.11,c.37.1.20 133809,133810 1fnsA 196 32.19 c.62.1.1 34136 1vbjA 281 33.05 2pvfA 334 33.53 1ijbA 202 34.19 c.62.1.1 71229 2ntoA 201 35.34 2pzzA 147 35.69 2v9vA 135 35.92 1f21A 155 36.90 c.55.3.1 33550 2ptzA 432 37.11 1lvaA 258 38.64 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3inkC 133 40.48 a.26.1.2 16881 1xo0A 324 41.94 a.60.9.1,d.163.1.1 115674,115675 1r9oA 477 42.31 a.104.1.1 104878 3d0cA 314 43.02 1tu7A 208 43.09 a.45.1.1,c.47.1.5 112653,112654 1bl0A 129 43.15 a.4.1.8,a.4.1.8 16053,16054 2dt5A 211 45.75 a.4.5.38,c.2.1.12 131708,131709 3cblA 377 46.96 2ehhA 294 47.50 2rfgA 297 49.90 1a0fA 201 49.97 a.45.1.1,c.47.1.5 17737,33031 2fuqA 747 51.46 2ii0A 490 51.56 a.117.1.1 137425 1uteA 313 52.51 d.159.1.1 42078 1sedA 117 52.80 a.219.1.1 105449 2dvzA 314 55.95 1xcbA 211 56.50 a.4.5.38,c.2.1.12 109552,109553 2v9dA 343 56.53 2hiqA 113 56.95 d.58.4.12 136529 1n2aA 201 57.42 a.45.1.1,c.47.1.5 91553,91554 1zd8A 227 57.88 2ahrA 259 57.89 a.100.1.10,c.2.1.6 126775,126776 1lrvA 244 58.41 a.118.1.5 19146 3cbuA 214 61.98 2reiA 318 62.64 2oezA 247 63.55 1f2eA 201 63.98 a.45.1.1,c.47.1.5 17745,33039 1g67A 225 64.29 c.1.3.1 60311 2vc7A 314 64.34 3b2tA 311 64.52 2fnoA 248 64.68 a.45.1.1,c.47.1.5 133821,133822 1fseA 74 68.57 a.4.6.2 60000 1ngkA 128 69.96 a.1.1.1 85673 1fw1A 216 71.05 a.45.1.1,c.47.1.5 60051,60052 2biiA 424 71.21 2cujA 108 71.93 a.4.1.18 130812 2v84A 343 72.98 1nfpA 228 73.18 c.1.16.2 29555 1lufA 343 74.53 d.144.1.7 78223 1h4pA 408 75.56 c.1.8.3 90617 1cjgA 62 77.03 a.35.1.5 17112 1ho8A 480 77.26 a.118.1.9 61107 2bjcA 62 77.93 a.35.1.5 128620 2dtrA 226 79.41 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2f5xA 312 83.31 1je8A 82 83.50 a.4.6.2 77108 1oe8A 211 83.65 a.45.1.1,c.47.1.5 86905,86906 1r0mA 375 84.38 c.1.11.2,d.54.1.1 104747,104748 2pvqA 201 84.44 1nhyA 219 86.02 a.45.1.1,c.47.1.5 80520,80521 2jmlA 81 88.24 2dh2A 424 88.34