# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 2.27e-22 3bcgA 215 2.60e-22 3ccyA 203 6.15e-22 3bhqA 211 9.67e-22 2uxuA 210 1.08e-21 2ibdA 204 1.10e-21 2zb9A 214 1.11e-21 1vi0A 206 1.25e-21 a.4.1.9,a.121.1.1 100720,100721 2f07A 197 1.29e-21 2hyjA 200 2.00e-21 1rktA 205 2.12e-21 a.4.1.9,a.121.1.1 97623,97624 2id6A 202 2.34e-21 3b81A 203 2.52e-21 2iekA 200 2.59e-21 2genA 197 2.77e-21 a.4.1.9,a.121.1.1 135062,135063 2g7sA 194 3.32e-21 a.4.1.9,a.121.1.1 134737,134738 1qvtA 194 3.45e-21 a.4.1.9,a.121.1.1 104602,104603 3cdlA 203 3.53e-21 3crjA 199 3.55e-21 2dg7A 195 3.85e-21 2qtqA 213 4.00e-21 3c2bA 221 4.55e-21 2rasA 212 4.78e-21 2fq4A 192 5.00e-21 a.4.1.9,a.121.1.1 133937,133938 2raeA 207 7.76e-21 3bruA 222 8.42e-21 3cjdA 198 9.49e-21 2hytA 197 1.42e-20 1jt6A 188 1.59e-20 a.4.1.9,a.121.1.1 67247,67248 1zkgA 212 1.80e-20 a.4.1.9,a.121.1.1 125194,125195 1z77A 200 1.88e-20 a.4.1.9,a.121.1.1 124588,124589 2of7A 260 1.98e-20 2qcoA 210 2.16e-20 1pb6A 212 2.26e-20 a.4.1.9,a.121.1.1 88017,88018 2id3A 225 3.10e-20 a.4.1.9,a.121.1.1 137261,137262 2jj7A 186 3.26e-20 3colA 196 4.64e-20 2zcmA 192 5.24e-20 1t56A 216 5.44e-20 a.4.1.9,a.121.1.1 106428,106429 3cwrA 208 5.60e-20 2iaiA 230 6.56e-20 2gfnA 209 9.19e-20 a.4.1.9,a.121.1.1 135101,135102 2nx4A 194 9.80e-20 1ui5A 215 1.10e-19 a.4.1.9,a.121.1.1 107856,107857 2o7tA 199 1.25e-19 2fx0A 201 1.34e-19 a.4.1.9,a.121.1.1 134269,134270 2fbqA 235 1.35e-19 a.4.1.9,a.121.1.1 133256,133257 2qibA 231 1.51e-19 1sgmA 191 1.87e-19 a.4.1.9,a.121.1.1 105537,105538 2iu5A 195 1.95e-19 2vprA 207 4.21e-19 3bniA 229 5.26e-19 2i10A 202 5.67e-19 a.4.1.9,a.121.1.1 136960,136961 2d6yA 202 6.00e-19 a.4.1.9,a.121.1.1 131313,131314 2q24A 194 6.23e-19 1zk8A 183 8.35e-19 a.4.1.9,a.121.1.1 125177,125178 2o7oA 207 9.02e-19 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 1.43e-18 2g3bA 208 1.60e-18 a.4.1.9,a.121.1.1 134558,134559 2optA 234 1.67e-18 1t33A 224 2.79e-18 a.4.1.9,a.121.1.1 106295,106296 3bqyA 209 3.31e-18 2dg8A 193 3.31e-18 3bjbA 207 4.42e-18 2oerA 214 5.39e-18 2qkoA 215 8.16e-18 2np5A 203 8.20e-18 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 8.38e-18 2tct 207 1.06e-17 2rekA 199 1.49e-17 2guhA 214 1.54e-17 2g7gA 213 1.69e-17 a.4.1.9,a.121.1.1 134732,134733 2qwtA 196 2.35e-17 2oi8A 216 3.45e-17 2fd5A 180 5.84e-17 a.4.1.9,a.121.1.1 133291,133292 2eh3A 179 5.97e-17 1z0xA 220 8.77e-17 a.4.1.9,a.121.1.1 124334,124335 1v7bA 185 4.05e-16 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.17e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 4.51e-15 2hkuA 215 7.69e-15 2jn6A 97 1.380 1hlvA 131 1.486 a.4.1.7,a.4.1.7 65854,65855 2hnlA 225 2.526 1on2A 142 2.916 a.4.5.24,a.76.1.1 87103,87104 1a0p 290 4.404 2pg4A 95 7.216 2rn7A 108 7.316 2on5A 206 9.622 1xcbA 211 10.17 a.4.5.38,c.2.1.12 109552,109553 3c6gA 479 11.45 2dt5A 211 11.75 a.4.5.38,c.2.1.12 131708,131709 2rcyA 262 12.90 1wdcC 156 12.98 a.39.1.5 17317 1lvaA 258 12.99 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2ekcA 262 13.86 2r8wA 332 15.06 1j09A 468 15.57 a.97.1.1,c.26.1.1 77025,77026 2eb2A 334 16.01 2fnaA 357 17.11 a.4.5.11,c.37.1.20 133809,133810 1m48A 133 17.97 a.26.1.2 74443 1fseA 74 19.95 a.4.6.2 60000 2ptzA 432 20.27 1sedA 117 20.27 a.219.1.1 105449 2ahrA 259 20.56 a.100.1.10,c.2.1.6 126775,126776 1m0uA 249 22.26 a.45.1.1,c.47.1.5 78359,78360 1zljA 78 22.87 1g8lA 411 23.06 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2v9vA 135 23.34 2rfpA 171 23.43 1je8A 82 24.30 a.4.6.2 77108 3bbyA 215 24.52 1ho8A 480 24.86 a.118.1.9 61107 1vbjA 281 25.05 3bkbA 377 25.39 1f21A 155 25.77 c.55.3.1 33550 2fuqA 747 26.53 1x1zA 252 29.51 c.1.2.3 121613 2dtr 226 29.59 2dvzA 314 29.78 2a2rA 210 30.35 a.45.1.1,c.47.1.5 126058,126059 1r9oA 477 30.56 a.104.1.1 104878 1xo0A 324 31.47 a.60.9.1,d.163.1.1 115674,115675 2ntoA 201 31.51 1zd8A 227 33.43 2bjcA 62 33.55 a.35.1.5 128620 2pvfA 334 33.77 3inkC 133 36.03 a.26.1.2 16881 1cjgA 62 36.70 a.35.1.5 17112 1fnsA 196 37.85 c.62.1.1 34136 3cblA 377 38.29 1gvfA 286 38.57 c.1.10.2 70599 1oe8A 211 39.72 a.45.1.1,c.47.1.5 86905,86906 1f2eA 201 41.87 a.45.1.1,c.47.1.5 17745,33039 2o09A 189 42.70 1ltqA 301 42.84 c.108.1.9,c.37.1.1 78208,78209 2biiA 424 43.96 2ii0A 490 45.14 a.117.1.1 137425 1p4wA 99 49.41 a.4.6.2 87783 2dh2A 424 51.15 1fw1A 216 51.87 a.45.1.1,c.47.1.5 60051,60052 2reiA 318 53.76 2jmlA 81 56.29 1sfxA 109 57.42 a.4.5.50 105505 2f5xA 312 58.20 2q0zX 339 58.35 1jlwA 219 58.93 a.45.1.1,c.47.1.5 71741,71742 1tu7A 208 59.09 a.45.1.1,c.47.1.5 112653,112654 3cbuA 214 60.30 1e6yB 433 60.59 a.89.1.1,d.58.31.2 18535,39453 1oqyA 368 62.14 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1a0fA 201 66.74 a.45.1.1,c.47.1.5 17737,33031 1qqcA 773 67.28 c.55.3.5,e.8.1.1 33724,43013 2vg2A 284 73.52 2gsqA 202 73.83 a.45.1.1,c.47.1.5 17715,33009 2pvqA 201 75.12 1ngkA 128 75.76 a.1.1.1 85673 1n2aA 201 78.75 a.45.1.1,c.47.1.5 91553,91554 1s7oA 113 78.85 a.4.13.3 105354 2no4A 240 79.97 2oezA 247 81.16 2qpqA 301 81.40 1m5yA 408 83.09 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 1nhyA 219 83.63 a.45.1.1,c.47.1.5 80520,80521 1k3yA 221 86.16 a.45.1.1,c.47.1.5 77245,77246 1nfpA 228 86.42 c.1.16.2 29555 2cujA 108 87.30 a.4.1.18 130812 1s1iG 119 87.80 i.1.1.1 105181 1lufA 343 89.61 d.144.1.7 78223