# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 1.37e-21 3bcgA 215 3.98e-21 3ccyA 203 7.56e-21 3bhqA 211 7.72e-21 2zb9A 214 9.14e-21 1vi0A 206 9.96e-21 a.4.1.9,a.121.1.1 100720,100721 2uxuA 210 1.13e-20 2ibdA 204 1.17e-20 2f07A 197 1.34e-20 2hyjA 200 1.75e-20 2dg7A 195 1.83e-20 2id6A 202 2.16e-20 2qtqA 213 2.19e-20 1rktA 205 2.19e-20 a.4.1.9,a.121.1.1 97623,97624 2iekA 200 2.24e-20 2genA 197 2.66e-20 a.4.1.9,a.121.1.1 135062,135063 3b81A 203 2.81e-20 2g7sA 194 2.89e-20 a.4.1.9,a.121.1.1 134737,134738 3crjA 199 2.96e-20 2rasA 212 3.07e-20 2fq4A 192 3.63e-20 a.4.1.9,a.121.1.1 133937,133938 1qvtA 194 3.82e-20 a.4.1.9,a.121.1.1 104602,104603 3c2bA 221 3.91e-20 3cdlA 203 4.30e-20 3bruA 222 5.39e-20 1zkgA 212 8.17e-20 a.4.1.9,a.121.1.1 125194,125195 2raeA 207 8.45e-20 3cjdA 198 1.05e-19 2hytA 197 1.18e-19 1jt6A 188 1.20e-19 a.4.1.9,a.121.1.1 67247,67248 2of7A 260 1.67e-19 1pb6A 212 1.71e-19 a.4.1.9,a.121.1.1 88017,88018 1z77A 200 1.83e-19 a.4.1.9,a.121.1.1 124588,124589 2jj7A 186 2.76e-19 2zcmA 192 3.29e-19 3colA 196 3.33e-19 2id3A 225 3.51e-19 a.4.1.9,a.121.1.1 137261,137262 1t56A 216 3.84e-19 a.4.1.9,a.121.1.1 106428,106429 2qcoA 210 4.19e-19 3cwrA 208 4.92e-19 2o7tA 199 6.13e-19 2qibA 231 6.22e-19 1ui5A 215 7.41e-19 a.4.1.9,a.121.1.1 107856,107857 2iaiA 230 7.67e-19 2iu5A 195 8.05e-19 2nx4A 194 8.46e-19 2gfnA 209 8.67e-19 a.4.1.9,a.121.1.1 135101,135102 2fbqA 235 1.14e-18 a.4.1.9,a.121.1.1 133256,133257 2fx0A 201 1.41e-18 a.4.1.9,a.121.1.1 134269,134270 1sgmA 191 1.48e-18 a.4.1.9,a.121.1.1 105537,105538 2i10A 202 2.50e-18 a.4.1.9,a.121.1.1 136960,136961 2vprA 207 2.62e-18 3bniA 229 3.35e-18 2q24A 194 4.46e-18 1zk8A 183 4.69e-18 a.4.1.9,a.121.1.1 125177,125178 2d6yA 202 6.02e-18 a.4.1.9,a.121.1.1 131313,131314 2o7oA 207 6.60e-18 a.4.1.9,a.121.1.1 138930,138931 1a6i 217 8.89e-18 2g3bA 208 9.17e-18 a.4.1.9,a.121.1.1 134558,134559 2optA 234 1.15e-17 2dg8A 193 1.70e-17 2oerA 214 2.01e-17 1t33A 224 2.29e-17 a.4.1.9,a.121.1.1 106295,106296 3bqyA 209 2.45e-17 3bjbA 207 2.68e-17 2qkoA 215 3.71e-17 2np5A 203 3.99e-17 a.4.1.9,a.121.1.1 138424,138425 2yveA 185 4.09e-17 2guhA 214 4.36e-17 2rekA 199 6.56e-17 2tct 207 6.56e-17 2g7gA 213 7.42e-17 a.4.1.9,a.121.1.1 134732,134733 2qwtA 196 1.40e-16 2oi8A 216 2.23e-16 1z0xA 220 3.04e-16 a.4.1.9,a.121.1.1 124334,124335 2fd5A 180 3.29e-16 a.4.1.9,a.121.1.1 133291,133292 2eh3A 179 3.60e-16 1v7bA 185 1.34e-15 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 3.90e-15 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 2.90e-14 2hkuA 215 3.67e-14 2jn6A 97 1.634 1hlvA 131 1.950 a.4.1.7,a.4.1.7 65854,65855 2hnlA 225 3.144 1a0p 290 4.175 1on2A 142 4.346 a.4.5.24,a.76.1.1 87103,87104 2on5A 206 7.431 2pg4A 95 7.686 2rcyA 262 8.114 1wdcC 156 8.759 a.39.1.5 17317 1m48A 133 9.122 a.26.1.2 74443 1xcbA 211 9.292 a.4.5.38,c.2.1.12 109552,109553 2rn7A 108 9.548 2dt5A 211 10.47 a.4.5.38,c.2.1.12 131708,131709 2dtr 226 10.95 1r9oA 477 14.23 a.104.1.1 104878 3c6gA 479 14.72 1jlwA 219 15.72 a.45.1.1,c.47.1.5 71741,71742 1cjgA 62 16.35 a.35.1.5 17112 1x1zA 252 16.87 c.1.2.3 121613 1j09A 468 17.46 a.97.1.1,c.26.1.1 77025,77026 1lvaA 258 18.66 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2bjcA 62 19.91 a.35.1.5 128620 2fnaA 357 20.40 a.4.5.11,c.37.1.20 133809,133810 2r8wA 332 21.54 1fseA 74 22.43 a.4.6.2 60000 2v9vA 135 24.46 1xo0A 324 24.56 a.60.9.1,d.163.1.1 115674,115675 2ekcA 262 24.95 3bkbA 377 26.47 2dvzA 314 27.43 1je8A 82 27.62 a.4.6.2 77108 1m0uA 249 28.26 a.45.1.1,c.47.1.5 78359,78360 1sedA 117 28.37 a.219.1.1 105449 1vbjA 281 29.61 2ahrA 259 29.62 a.100.1.10,c.2.1.6 126775,126776 1g8lA 411 29.75 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1ngkA 128 30.28 a.1.1.1 85673 1zljA 78 30.32 1f21A 155 34.18 c.55.3.1 33550 2ntoA 201 35.79 2zfoC 147 37.23 2a2rA 210 37.26 a.45.1.1,c.47.1.5 126058,126059 1ho8A 480 37.60 a.118.1.9 61107 1p4wA 99 38.17 a.4.6.2 87783 2rfpA 171 39.37 1oe8A 211 40.95 a.45.1.1,c.47.1.5 86905,86906 2eb2A 334 41.32 3cblA 377 44.78 1f2eA 201 45.11 a.45.1.1,c.47.1.5 17745,33039 1zcbA 362 45.27 a.66.1.1,c.37.1.8 124901,124902 2f5xA 312 46.64 1sfxA 109 47.61 a.4.5.50 105505 1nhyA 219 48.10 a.45.1.1,c.47.1.5 80520,80521 2biiA 424 48.89 3bbyA 215 49.60 1a0fA 201 50.17 a.45.1.1,c.47.1.5 17737,33031 1zd8A 227 50.34 1resA 43 50.90 a.4.1.2 16023 2fuqA 747 54.34 1hcrA 52 54.46 a.4.1.2 16020 1fw1A 216 57.74 a.45.1.1,c.47.1.5 60051,60052 1anfA 370 58.45 c.94.1.1 35776 2dh2A 424 59.41 1fnsA 196 59.48 c.62.1.1 34136 1m5yA 408 60.09 a.223.1.2,d.26.1.1,d.26.1.1 78664,78665,78666 2qpqA 301 61.77 2hiqA 113 61.83 d.58.4.12 136529 3d0cA 314 62.23 2qkbA 154 62.58 2ii0A 490 63.67 a.117.1.1 137425 3inkC 133 64.61 a.26.1.2 16881 2q88A 257 64.89 2pvfA 334 70.97 1n2aA 201 71.62 a.45.1.1,c.47.1.5 91553,91554 1gvfA 286 71.75 c.1.10.2 70599 2ptzA 432 72.70 2qguA 211 73.40 2dtrA 226 75.60 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 2reiA 318 78.73 1xsvA 113 79.30 a.4.13.3 116003 1ltqA 301 79.67 c.108.1.9,c.37.1.1 78208,78209 1w07A 659 80.88 a.29.3.2,a.29.3.2,e.6.1.2 114046,114047,114048 1g67A 225 82.19 c.1.3.1 60311 2o09A 189 82.65 1s1iG 119 83.11 i.1.1.1 105181 2vc7A 314 83.11 2vg2A 284 84.46 2gsqA 202 85.70 a.45.1.1,c.47.1.5 17715,33009 1bl0A 129 86.01 a.4.1.8,a.4.1.8 16053,16054 2pvqA 201 86.29 1ciyA 590 87.61 b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 2cvdA 198 88.92 a.45.1.1,c.47.1.5 130861,130862 1s7oA 113 89.07 a.4.13.3 105354