# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2pbxA 203 4.28e-25 3bcgA 215 8.15e-25 3ccyA 203 2.28e-24 2f07A 197 5.70e-24 2ibdA 204 6.37e-24 2uxuA 210 6.79e-24 3bhqA 211 8.16e-24 1vi0A 206 8.55e-24 a.4.1.9,a.121.1.1 100720,100721 2g7sA 194 1.27e-23 a.4.1.9,a.121.1.1 134737,134738 2dg7A 195 1.38e-23 2rasA 212 1.43e-23 2hyjA 200 1.47e-23 2genA 197 2.02e-23 a.4.1.9,a.121.1.1 135062,135063 3crjA 199 2.40e-23 3cdlA 203 2.41e-23 2id6A 202 2.65e-23 3b81A 203 2.72e-23 2qtqA 213 4.97e-23 3bruA 222 6.27e-23 2zb9A 214 6.53e-23 2raeA 207 6.80e-23 2iekA 200 7.54e-23 1rktA 205 7.59e-23 a.4.1.9,a.121.1.1 97623,97624 2fq4A 192 1.13e-22 a.4.1.9,a.121.1.1 133937,133938 2hytA 197 1.26e-22 1qvtA 194 1.47e-22 a.4.1.9,a.121.1.1 104602,104603 1pb6A 212 1.69e-22 a.4.1.9,a.121.1.1 88017,88018 3cjdA 198 1.80e-22 3c2bA 221 2.43e-22 3colA 196 3.22e-22 2of7A 260 3.39e-22 1t56A 216 4.09e-22 a.4.1.9,a.121.1.1 106428,106429 1z77A 200 4.17e-22 a.4.1.9,a.121.1.1 124588,124589 2gfnA 209 6.07e-22 a.4.1.9,a.121.1.1 135101,135102 2jj7A 186 6.68e-22 1jt6A 188 6.70e-22 a.4.1.9,a.121.1.1 67247,67248 2qcoA 210 6.99e-22 2nx4A 194 8.20e-22 2id3A 225 8.29e-22 a.4.1.9,a.121.1.1 137261,137262 2iaiA 230 1.14e-21 2qibA 231 1.22e-21 1zkgA 212 1.29e-21 a.4.1.9,a.121.1.1 125194,125195 2o7tA 199 1.47e-21 2zcmA 192 2.40e-21 3cwrA 208 2.48e-21 1sgmA 191 4.51e-21 a.4.1.9,a.121.1.1 105537,105538 2fbqA 235 5.50e-21 a.4.1.9,a.121.1.1 133256,133257 1ui5A 215 6.63e-21 a.4.1.9,a.121.1.1 107856,107857 2d6yA 202 8.73e-21 a.4.1.9,a.121.1.1 131313,131314 3bniA 229 1.21e-20 2fx0A 201 1.42e-20 a.4.1.9,a.121.1.1 134269,134270 2q24A 194 1.70e-20 2iu5A 195 2.07e-20 2i10A 202 2.24e-20 a.4.1.9,a.121.1.1 136960,136961 2g3bA 208 4.78e-20 a.4.1.9,a.121.1.1 134558,134559 2o7oA 207 4.92e-20 a.4.1.9,a.121.1.1 138930,138931 2np5A 203 5.21e-20 a.4.1.9,a.121.1.1 138424,138425 2vprA 207 6.83e-20 1zk8A 183 7.45e-20 a.4.1.9,a.121.1.1 125177,125178 1a6i 217 7.65e-20 3bqyA 209 1.23e-19 2dg8A 193 1.39e-19 2guhA 214 1.65e-19 1t33A 224 1.83e-19 a.4.1.9,a.121.1.1 106295,106296 2qkoA 215 2.19e-19 2yveA 185 2.58e-19 2oerA 214 3.06e-19 2qwtA 196 3.49e-19 2optA 234 4.27e-19 2fd5A 180 4.40e-19 a.4.1.9,a.121.1.1 133291,133292 3bjbA 207 6.01e-19 2rekA 199 2.01e-18 2oi8A 216 2.89e-18 2tct 207 4.51e-18 2eh3A 179 5.86e-18 1z0xA 220 6.17e-18 a.4.1.9,a.121.1.1 124334,124335 2g7gA 213 1.04e-17 a.4.1.9,a.121.1.1 134732,134733 1v7bA 185 1.31e-17 a.4.1.9,a.121.1.1 119861,119862 2g7lA 243 1.23e-16 a.4.1.9,a.121.1.1 134734,134735 2hxoA 237 1.05e-15 2hkuA 215 3.23e-15 2pzzA 147 3.085 1a0p 290 4.492 2on5A 206 5.778 1jlwA 219 9.280 a.45.1.1,c.47.1.5 71741,71742 2hnlA 225 11.30 2jn6A 97 13.88 1on2A 142 14.22 a.4.5.24,a.76.1.1 87103,87104 2fuqA 747 17.45 1x1zA 252 17.49 c.1.2.3 121613 2v9vA 135 18.18 1r9oA 477 18.59 a.104.1.1 104878 1dlcA 584 20.04 b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 2e9xD 223 21.51 1hlvA 131 26.94 a.4.1.7,a.4.1.7 65854,65855 2dtr 226 29.09 1w99A 558 29.78 1h3fA 432 29.89 c.26.1.1,d.66.1.4 76631,76632 3d0cA 314 31.54 1vs5C 233 32.02 2r8wA 332 33.79 1oqyA 368 35.39 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1wdcC 156 40.20 a.39.1.5 17317 2oxoA 103 41.27 2gsqA 202 43.48 a.45.1.1,c.47.1.5 17715,33009 1xo0A 324 44.58 a.60.9.1,d.163.1.1 115674,115675 2qalC 232 44.73 2hldG 278 45.91 1tu7A 208 47.42 a.45.1.1,c.47.1.5 112653,112654 2d4pA 141 47.65 2bvwA 362 49.82 c.6.1.1 30666 2ehhA 294 51.29 1pnsC 206 51.46 i.1.1.1 88170 2pg4A 95 53.61 1f44A 324 53.81 a.60.9.1,d.163.1.1 64982,64983 1mqiA 263 54.99 c.94.1.1 91398 2rn7A 108 56.17 1zd8A 227 56.80 2aamA 309 57.33 c.1.8.15 126489 1ltqA 301 57.41 c.108.1.9,c.37.1.1 78208,78209 1nhyA 219 62.64 a.45.1.1,c.47.1.5 80520,80521 3bbyA 215 64.40 1hw5A 210 64.57 a.4.5.4,b.82.3.2 16098,28137 2cstA 411 65.15 c.67.1.1 34273 1ayl 541 67.67 2rfgA 297 71.08 1sjyA 159 71.39 d.113.1.1 98900 1bxeA 113 72.21 d.55.1.1 38898 3cox 507 72.66 1ex2A 189 72.76 c.51.4.2 33225 2r4vA 247 73.58 3cbuA 214 74.43 2yxoA 267 74.46 1i6xA 209 76.33 a.4.5.4,b.82.3.2 83673,83674 1c4zA 358 76.46 d.148.1.1 41766 2hwjA 205 76.70 2dr1A 386 76.83 3c9gA 142 78.02 2qkbA 154 78.97 2a2rA 210 79.61 a.45.1.1,c.47.1.5 126058,126059 2or2A 296 80.63 2uxqA 402 81.39 1fx3A 169 81.72 d.33.1.1 38524 3ci3A 194 82.10 1tn6B 437 82.82 a.102.4.3 112528 1svsA 353 85.16 c.37.1.8 106051 1knqA 175 85.21 c.37.1.17 72786 2qfmA 364 85.85 1oe8A 211 86.72 a.45.1.1,c.47.1.5 86905,86906 1m0uA 249 88.57 a.45.1.1,c.47.1.5 78359,78360 1cjgA 62 89.63 a.35.1.5 17112