# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2plsA 86 3.55e-14 2p13A 90 4.20e-13 2oaiA 94 5.18e-13 2nqwA 93 7.41e-13 2o1rA 81 1.24e-12 2p4pA 86 1.97e-12 2pliA 91 3.57e-12 2p3hA 101 2.49e-08 2rk5A 87 5.30e-08 2r6fA 972 1.59e+00 2nrlA 147 2.13e+00 1lktA 104 2.63e+00 1lktA b.90.1.1 28398 2g2kA 170 2.88e+00 2qcoA 210 3.21e+00 2anrA 178 3.60e+00 2z14A 133 4.14e+00 2k0mA 104 4.15e+00 1g13A 162 4.99e+00 1g13A b.95.1.1 60194 1fxiA 96 5.91e+00 1awd d.15.4.1 37664 2pp6A 102 6.17e+00 2e6mA 208 6.90e+00 2b5gA 171 7.46e+00 d.108.1.1 127892 2z0tA 109 8.19e+00 2pnqA 467 8.78e+00 1q98A 165 9.35e+00 c.47.1.10 96253 1wovA 250 9.99e+00 a.132.1.1 121124 1ifc 132 1.16e+01 1ifcA 132 1.16e+01 b.60.1.2 27173 2c1fA 234 1.18e+01 1kjnA 157 1.20e+01 c.115.1.1 72614 1fjrA 195 1.24e+01 1fjrA b.102.1.1 59855 2e9xB 185 1.43e+01 1icmA 131 1.43e+01 b.60.1.2 27174 2z20A 432 1.47e+01 2ehsA 77 1.56e+01 2z0dB 125 1.61e+01 d.15.1.3 140096 1x3kA 152 1.63e+01 2vg9A 217 1.65e+01 1s1hC 192 1.71e+01 i.1.1.1 105156 2ovkC 159 1.92e+01 1yvcA 70 2.17e+01 b.40.4.12 124094 1t8vA 131 2.19e+01 b.60.1.2 119191 1t3bA 211 2.25e+01 c.47.1.9,d.17.3.1 106341,106342 1g8mA 593 2.26e+01 1g8mA c.24.1.3,c.97.1.4 60371,60372 2ns2A 242 2.32e+01 2gjgA 248 2.36e+01 1wdcC 156 2.46e+01 1wdcC a.39.1.5 17317 2ey4C 82 2.49e+01 b.43.3.5 132582 2jdcA 146 2.51e+01 2h58A 330 2.69e+01 2b49A 287 2.75e+01 2bswA 146 2.78e+01 d.108.1.1 129127 1r4vA 171 2.82e+01 a.22.1.4 97049 1dfoA 417 2.89e+01 1bj4A c.67.1.4 34480 3cewA 125 2.99e+01 2in3A 216 3.02e+01 1hwxA 501 3.15e+01 1hwyA c.2.1.7,c.58.1.1 30250,33898 1v8cA 168 3.17e+01 d.15.3.1,d.129.5.1 100495,100496 3bwlA 126 3.26e+01 1s1eA 224 3.63e+01 a.39.1.5 112007 2osaA 202 3.66e+01 1ss4A 153 3.70e+01 d.32.1.6 105976 2vgeA 229 3.74e+01 2id3A 225 3.75e+01 a.4.1.9,a.121.1.1 137261,137262 1nh8A 304 3.87e+01 c.94.1.1,d.58.5.3 80507,80508 1pbwA 216 4.01e+01 1pbwA a.116.1.1 19103 1rfkA 98 4.02e+01 1smoA 119 4.10e+01 b.1.1.1 105764 1offA 97 4.22e+01 d.15.4.1 86947 1czpA 98 4.26e+01 1awd d.15.4.1 37645 2fo3A 125 4.26e+01 d.20.1.1 133868 1p6pA 125 4.29e+01 b.60.1.2 87839 1a70A 97 4.31e+01 d.15.4.1 37678 3cu3A 172 4.34e+01 3ccgA 190 4.65e+01 2uzhA 165 4.72e+01 2ag9A 164 4.83e+01 1a2xA 159 4.87e+01 1ncx a.39.1.5 17251 1gnuA 117 4.88e+01 d.15.1.3 65403 1yqbA 100 4.88e+01 d.15.1.1 123876 1s6cA 183 5.00e+01 a.39.1.5 98594 1fltX 95 5.27e+01 1fltX b.1.1.4 21765 1z06A 189 5.39e+01 c.37.1.8 124301 1m9nA 613 5.40e+01 c.24.1.3,c.97.1.4 78870,78871 2ag4A 164 5.41e+01 b.95.1.1 126717 1lddA 74 5.62e+01 a.4.5.34 73841 2h8zA 359 5.63e+01 1qxoA 388 5.65e+01 d.258.1.1 96539 2r6gG 296 5.66e+01 1f1mA 164 5.82e+01 1ggqA a.24.12.1 59598 2qdlA 165 6.09e+01 1kq8A 100 6.18e+01 a.4.5.14 68797 1vgmA 378 6.19e+01 1czyA 168 6.36e+01 1d0aB b.8.1.1,h.1.2.1 23220,45427 2qo4A 126 6.40e+01 2r2iA 198 6.52e+01 2fd6U 276 6.54e+01 1sseB 86 6.56e+01 1tejA 64 6.84e+01 g.20.1.1 106815 2fkkA 206 6.95e+01 1smlA 269 7.01e+01 1smlA d.157.1.1 42053 1b66A 140 7.31e+01 1b66A d.96.1.2 40657 1hwyA 501 7.33e+01 1hwyA c.2.1.7,c.58.1.1 30262,33910 3ce7A 107 7.72e+01 2ch4W 151 7.81e+01 b.40.7.1 130451