# TARGET T0453 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0453.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 184.823 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 D 0.007 0.003 0.001 0.002 0.158 0.830 2 G 0.020 0.008 0.031 0.057 0.427 0.458 3 E 0.062 0.018 0.059 0.087 0.465 0.309 4 E 0.133 0.023 0.081 0.070 0.465 0.229 5 D 0.220 0.004 0.054 0.068 0.322 0.332 6 E 0.442 0.006 0.036 0.085 0.171 0.260 7 I 0.676 0.010 0.011 0.134 0.062 0.106 8 V 0.877 0.006 0.002 0.042 0.017 0.056 9 Q 0.931 0.009 0.001 0.011 0.014 0.034 10 R 0.833 0.015 0.003 0.004 0.127 0.018 11 E 0.387 0.006 0.008 0.002 0.578 0.019 12 D 0.033 0.001 0.010 0.002 0.936 0.018 13 G 0.109 0.005 0.006 0.001 0.838 0.041 14 S 0.810 0.017 0.002 0.001 0.077 0.094 15 W 0.964 0.004 0.001 0.001 0.009 0.022 16 L 0.979 0.003 0.001 0.001 0.006 0.012 17 V 0.956 0.004 0.001 0.001 0.010 0.029 18 D 0.786 0.002 0.003 0.001 0.090 0.118 19 G 0.615 0.001 0.005 0.001 0.136 0.241 20 M 0.774 0.008 0.004 0.001 0.063 0.149 21 V 0.725 0.040 0.001 0.001 0.043 0.189 22 S 0.314 0.014 0.001 0.003 0.030 0.638 23 L 0.005 0.001 0.029 0.948 0.006 0.012 24 D 0.002 0.001 0.029 0.963 0.004 0.002 25 R 0.001 0.001 0.045 0.950 0.004 0.001 26 F 0.003 0.001 0.015 0.971 0.006 0.003 27 R 0.003 0.001 0.012 0.967 0.013 0.005 28 E 0.004 0.001 0.011 0.935 0.029 0.021 29 F 0.013 0.003 0.008 0.880 0.029 0.068 30 F 0.026 0.010 0.017 0.582 0.084 0.280 31 E 0.049 0.009 0.027 0.068 0.132 0.714 32 L 0.068 0.008 0.020 0.014 0.132 0.757 33 E 0.077 0.018 0.014 0.008 0.129 0.755 34 A 0.057 0.016 0.009 0.004 0.147 0.769 35 P 0.033 0.021 0.005 0.003 0.172 0.766 36 L 0.035 0.026 0.016 0.011 0.372 0.541 37 P 0.047 0.036 0.053 0.035 0.520 0.310 38 G 0.042 0.030 0.102 0.052 0.603 0.169 39 E 0.043 0.036 0.101 0.050 0.678 0.092 40 A 0.032 0.023 0.064 0.064 0.668 0.150 41 G 0.017 0.010 0.037 0.065 0.684 0.188 42 G 0.024 0.011 0.027 0.053 0.611 0.275 43 N 0.063 0.032 0.028 0.062 0.367 0.447 44 I 0.130 0.048 0.026 0.075 0.368 0.353 45 H 0.117 0.017 0.026 0.128 0.240 0.472 46 T 0.302 0.034 0.031 0.331 0.074 0.228 47 L 0.087 0.007 0.016 0.830 0.017 0.043 48 A 0.075 0.002 0.011 0.867 0.013 0.031 49 G 0.029 0.001 0.008 0.936 0.010 0.016 50 V 0.029 0.001 0.012 0.926 0.020 0.013 51 M 0.028 0.002 0.020 0.929 0.018 0.004 52 L 0.018 0.001 0.044 0.904 0.030 0.003 53 Y 0.006 0.001 0.022 0.957 0.012 0.002 54 Q 0.004 0.001 0.020 0.944 0.017 0.013 55 L 0.005 0.002 0.024 0.857 0.036 0.075 56 G 0.007 0.003 0.007 0.057 0.081 0.844 57 R 0.023 0.021 0.008 0.024 0.094 0.830 58 V 0.044 0.020 0.004 0.004 0.156 0.772 59 P 0.049 0.032 0.009 0.003 0.254 0.652 60 S 0.053 0.013 0.020 0.002 0.754 0.158 61 V 0.083 0.008 0.025 0.003 0.778 0.103 62 T 0.085 0.004 0.019 0.004 0.768 0.120 63 D 0.547 0.013 0.007 0.003 0.311 0.119 64 R 0.875 0.013 0.001 0.003 0.028 0.081 65 F 0.970 0.006 0.001 0.001 0.007 0.016 66 E 0.974 0.006 0.001 0.001 0.008 0.011 67 W 0.861 0.007 0.003 0.001 0.123 0.005 68 N 0.248 0.001 0.006 0.001 0.727 0.017 69 G 0.110 0.001 0.004 0.001 0.850 0.035 70 F 0.869 0.008 0.001 0.001 0.102 0.021 71 S 0.973 0.001 0.001 0.001 0.004 0.021 72 F 0.996 0.001 0.001 0.001 0.001 0.003 73 E 0.995 0.001 0.001 0.001 0.001 0.004 74 V 0.996 0.001 0.001 0.001 0.001 0.003 75 V 0.989 0.001 0.001 0.001 0.002 0.009 76 D 0.941 0.002 0.001 0.001 0.030 0.027 77 M 0.483 0.007 0.003 0.004 0.412 0.091 78 D 0.059 0.002 0.008 0.003 0.842 0.086 79 R 0.028 0.003 0.033 0.007 0.895 0.034 80 T 0.108 0.010 0.042 0.009 0.621 0.210 81 R 0.485 0.050 0.048 0.007 0.198 0.213 82 V 0.685 0.007 0.018 0.004 0.110 0.176 83 D 0.816 0.001 0.007 0.002 0.055 0.117 84 K 0.979 0.001 0.001 0.001 0.006 0.013 85 I 0.993 0.001 0.001 0.001 0.002 0.004 86 L 0.993 0.001 0.001 0.001 0.001 0.004 87 V 0.957 0.001 0.001 0.003 0.006 0.033 88 Q 0.672 0.003 0.001 0.002 0.046 0.275 89 R 0.133 0.008 0.001 0.003 0.084 0.770 90 H 0.027 0.008 0.001 0.001 0.079 0.883 91 H 0.012 0.003 0.001 0.001 0.033 0.952