# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	5.53e-12	d.17.4.8	86306
1s5aA	150	6.91e-12	d.17.4.10	98525
1tuhA	156	1.05e-10	d.17.4.11	107345
2bngA	149	1.13e-09		
1ocvA	125	3.69e-09	d.17.4.3	86810
1ohpA	125	6.10e-09	d.17.4.3	118702
1oh0A	131	6.19e-09	d.17.4.3	87004
1buqA	125	8.93e-09	d.17.4.3	38111
1dmmA	131	9.14e-09	d.17.4.3	38114
1ea2A	131	4.05e-08	d.17.4.3	64860
1opy	131	5.69e-07		
1sjwA	144	1.98e-06	d.17.4.9	98899
2geyA	158	4.91e-06		
2a15A	139	3.29e-05	d.17.4.3	125973
2ux0A	143	0.000128		
1m98A	317	0.001853	a.175.1.1,d.17.4.6	78866,78867
3cu3A	172	0.002484		
2chcA	170	0.007995		
3bb9A	148	0.009708		
1hkxA	147	0.01333	d.17.4.7	83567
2f86B	143	0.03361		
2r4iA	123	0.05247		
2gxfA	142	0.06048		
2rfrA	155	0.06216		
2owpA	129	0.2943		
3blzA	128	0.3945		
2rgqA	144	0.4473		
3cnxA	170	0.4482		
1tp6A	128	0.6897	d.17.4.12	107184
1uliB	187	3.569	d.17.4.4	107923
2db1A	118	3.982		
3b7cA	122	4.705		
1jkgB	250	13.23	d.17.4.2	66796
2b1xB	172	18.19	d.17.4.4	127677
1bco	327	24.28		
1bcoA	327	24.43	b.48.1.1,c.55.3.3	26431,33676
1uf3A	228	25.66	d.159.1.6	99317
2b02A	119	26.09		
1dkxA	219	26.26	a.8.4.1,b.130.1.1	90339,90340
2cw9A	194	28.80	d.17.4.13	130920
2iorA	235	38.36		
2gbwB	174	38.40		
2hhiA	204	40.26		
1jmoA	480	42.18	e.1.1.1	77138
1vqqA	646	44.85	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
1imvA	398	45.78	e.1.1.1	62591
2avkA	136	46.44		
2achA	360	46.72	e.1.1.1	42626
1oiaA	95	47.80	d.58.7.1	87051
2oemA	413	52.06		
1wddA	477	53.61	c.1.14.1,d.58.9.1	114528,114529
1jb2A	127	54.82	d.17.4.2	71624
1ekqA	272	56.16	c.72.1.2	34941
2hglA	136	56.94		
2ckfB	174	57.59		
1ounA	127	60.96	d.17.4.2	38090
1vlsA	146	62.98	a.24.2.1	16532
1l3kA	196	68.01	d.58.7.1,d.58.7.1	73539,73540
1nu4A	97	68.91	d.58.7.1	80731
2qyxA	238	74.86		
1svdA	473	75.33	c.1.14.1,d.58.9.1	119057,119058
2d69A	430	77.82	c.1.14.1,d.58.9.1	131292,131293
1as4A	341	84.42	e.1.1.1	42623
1k8vA	40	84.74	j.6.1.1	72182
2pv7A	298	85.14		
2hzcA	87	87.56