# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.32e-11	d.17.4.10	98525
1nwwA	149	1.38e-11	d.17.4.8	86306
1tuhA	156	2.10e-10	d.17.4.11	107345
2bngA	149	2.64e-09		
1buqA	125	8.25e-09	d.17.4.3	38111
1ocvA	125	1.49e-08	d.17.4.3	86810
1oh0A	131	1.65e-08	d.17.4.3	87004
1dmmA	131	1.66e-08	d.17.4.3	38114
1ohpA	125	1.75e-08	d.17.4.3	118702
1ea2A	131	7.79e-08	d.17.4.3	64860
1opy	131	9.51e-07		
1sjwA	144	3.19e-06	d.17.4.9	98899
2geyA	158	1.14e-05		
2a15A	139	6.28e-05	d.17.4.3	125973
2ux0A	143	0.000287		
3cu3A	172	0.003156		
1m98A	317	0.004497	a.175.1.1,d.17.4.6	78866,78867
2chcA	170	0.006949		
3bb9A	148	0.01297		
1hkxA	147	0.02289	d.17.4.7	83567
2rfrA	155	0.04807		
2gxfA	142	0.08328		
2r4iA	123	0.08374		
2f86B	143	0.1016		
2owpA	129	0.3479		
2rgqA	144	0.7148		
3blzA	128	0.7226		
3cnxA	170	1.091		
1tp6A	128	1.262	d.17.4.12	107184
3b7cA	122	4.313		
2db1A	118	5.351		
1uliB	187	9.395	d.17.4.4	107923
1jkgB	250	12.58	d.17.4.2	66796
1bco	327	15.84		
1bcoA	327	17.80	b.48.1.1,c.55.3.3	26431,33676
2b02A	119	28.84		
2qyxA	238	29.64		
1uf3A	228	32.15	d.159.1.6	99317
2hhiA	204	35.56		
2hglA	136	38.61		
2b1xB	172	41.75	d.17.4.4	127677
1imvA	398	47.20	e.1.1.1	62591
1pbyB	337	49.32	b.69.2.2	94422
2admA	421	52.24	c.66.1.27,d.287.1.1	111611,111612
1dkxA	219	52.69	a.8.4.1,b.130.1.1	90339,90340
1jb2A	127	58.66	d.17.4.2	71624
2iorA	235	62.06		
1ounA	127	63.06	d.17.4.2	38090
1aqjA	421	74.36	c.66.1.27,d.287.1.1	111563,111564
1s1qA	145	78.89	d.20.1.2	98351
1oiaA	95	78.93	d.58.7.1	87051
1u2fA	90	80.76	d.58.7.1	39168
2hzcA	87	82.96		
2avkA	136	84.12		
2oemA	413	85.64		
2cw9A	194	88.17	d.17.4.13	130920
2ff4A	388	88.65	a.4.6.1,a.118.8.3,b.26.1.2	133367,133368,133369