# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	8.48e-12	d.17.4.10	98525
1nwwA	149	4.13e-11	d.17.4.8	86306
1tuhA	156	9.95e-10	d.17.4.11	107345
2bngA	149	2.07e-09		
1ohpA	125	1.14e-08	d.17.4.3	118702
1oh0A	131	1.27e-08	d.17.4.3	87004
1buqA	125	1.76e-08	d.17.4.3	38111
1ocvA	125	1.88e-08	d.17.4.3	86810
1dmmA	131	2.94e-08	d.17.4.3	38114
1ea2A	131	1.92e-07	d.17.4.3	64860
1opy	131	9.29e-07		
1sjwA	144	2.26e-06	d.17.4.9	98899
2geyA	158	8.27e-06		
2a15A	139	7.70e-05	d.17.4.3	125973
2ux0A	143	0.000324		
2chcA	170	0.001003		
3cu3A	172	0.001293		
3bb9A	148	0.007197		
1m98A	317	0.007466	a.175.1.1,d.17.4.6	78866,78867
2rfrA	155	0.01322		
2f86B	143	0.01530		
1hkxA	147	0.01659	d.17.4.7	83567
2gxfA	142	0.01692		
2r4iA	123	0.04584		
2rgqA	144	0.1322		
2owpA	129	0.3735		
3blzA	128	0.3914		
3cnxA	170	0.6756		
3b7cA	122	1.931		
1jkgB	250	2.784	d.17.4.2	66796
1uliB	187	2.826	d.17.4.4	107923
1tp6A	128	3.073	d.17.4.12	107184
2db1A	118	5.334		
2qyxA	238	5.710		
2b1xB	172	8.168	d.17.4.4	127677
1ounA	127	10.32	d.17.4.2	38090
2imjA	166	10.53		
2frvB	536	20.49	e.18.1.1	43291
1gceA	364	29.16	e.3.1.1	42738
1askA	127	31.67	d.17.4.2	38094
1bco	327	33.31		
1bcoA	327	33.58	b.48.1.1,c.55.3.3	26431,33676
1vqqA	646	36.02	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2gbwB	174	37.11		
2ff4A	388	38.99	a.4.6.1,a.118.8.3,b.26.1.2	133367,133368,133369
1imvA	398	43.66	e.1.1.1	62591
1jb2A	127	45.68	d.17.4.2	71624
1zo2A	129	48.78		
2hhiA	204	55.63		
1l3kA	196	56.64	d.58.7.1,d.58.7.1	73539,73540
1aqjA	421	57.96	c.66.1.27,d.287.1.1	111563,111564
2ckfB	174	59.45		
2hkeA	380	60.92		
2avkA	136	62.80		
1gy6A	127	64.79	d.17.4.2	70736
2cw9A	194	65.19	d.17.4.13	130920
2yueA	168	66.43		
1svdA	473	69.38	c.1.14.1,d.58.9.1	119057,119058
1k8vA	40	71.10	j.6.1.1	72182
1oiaA	95	71.62	d.58.7.1	87051
2oemA	413	74.25		
1n40A	396	74.47	a.104.1.1	79977
2pw4A	188	76.34		
2hzcA	87	76.93		
1zkjA	359	79.12		
2achA	360	79.40	e.1.1.1	42626
1u2fA	90	79.77	d.58.7.1	39168
1dkxA	219	80.40	a.8.4.1,b.130.1.1	90339,90340
1dz4A	414	80.94	a.104.1.1	18903
1wddA	477	82.31	c.1.14.1,d.58.9.1	114528,114529
2nvmA	126	82.34	d.326.1.1	138631
2pv7A	298	82.53		
2b02A	119	84.34		
2hglA	136	85.12		
1ndoB	194	85.25	d.17.4.4	38121
1oo0B	110	85.57	d.58.7.1	87183
2admA	421	89.88	c.66.1.27,d.287.1.1	111611,111612