# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.22e-11	d.17.4.10	98525
1nwwA	149	1.31e-11	d.17.4.8	86306
1tuhA	156	4.12e-10	d.17.4.11	107345
2bngA	149	4.96e-10		
1oh0A	131	4.77e-09	d.17.4.3	87004
1ohpA	125	5.90e-09	d.17.4.3	118702
1dmmA	131	1.36e-08	d.17.4.3	38114
1ocvA	125	1.40e-08	d.17.4.3	86810
1buqA	125	4.02e-08	d.17.4.3	38111
1ea2A	131	7.33e-08	d.17.4.3	64860
1opy	131	4.00e-07		
1sjwA	144	4.98e-06	d.17.4.9	98899
2geyA	158	1.32e-05		
2a15A	139	3.40e-05	d.17.4.3	125973
2ux0A	143	0.000316		
1m98A	317	0.001680	a.175.1.1,d.17.4.6	78866,78867
2chcA	170	0.001846		
3cu3A	172	0.006683		
3bb9A	148	0.02214		
2rfrA	155	0.02728		
1hkxA	147	0.02955	d.17.4.7	83567
2f86B	143	0.04337		
2r4iA	123	0.05627		
2gxfA	142	0.1103		
2owpA	129	0.2270		
2rgqA	144	0.2705		
3cnxA	170	0.6559		
1tp6A	128	1.114	d.17.4.12	107184
3blzA	128	2.873		
3b7cA	122	3.143		
2db1A	118	8.105		
1uliB	187	8.108	d.17.4.4	107923
1jkgB	250	8.557	d.17.4.2	66796
1bco	327	18.84		
1ekqA	272	22.05	c.72.1.2	34941
1ounA	127	24.13	d.17.4.2	38090
1bcoA	327	29.65	b.48.1.1,c.55.3.3	26431,33676
2b1xB	172	30.91	d.17.4.4	127677
2imjA	166	34.02		
2iorA	235	37.73		
2avkA	136	38.69		
1dkxA	219	39.70	a.8.4.1,b.130.1.1	90339,90340
2qyxA	238	46.34		
1uf3A	228	48.29	d.159.1.6	99317
1oiaA	95	50.72	d.58.7.1	87051
1fp3A	402	52.82	a.102.1.3	18842
2hglA	136	52.98		
1u00A	227	54.49	a.8.4.1,b.130.1.1	112900,112901
2oemA	413	54.65		
1jb2A	127	61.05	d.17.4.2	71624
1nu4A	97	61.58	d.58.7.1	80731
2b02A	119	61.73		
1vlsA	146	62.80	a.24.2.1	16532
2gbwB	174	63.90		
2hhiA	204	67.84		
1askA	127	69.57	d.17.4.2	38094
2hzcA	87	74.73		
1zo2A	129	74.89		
1wddA	477	76.64	c.1.14.1,d.58.9.1	114528,114529
2bl0C	142	81.92		
1svdA	473	83.03	c.1.14.1,d.58.9.1	119057,119058
1yreA	197	85.06	d.108.1.1	123919
1n3gA	113	85.80	d.204.1.1	79962
1imvA	398	86.16	e.1.1.1	62591
1on0A	158	86.52	d.108.1.1	87095
2ac0A	200	86.68	b.2.5.2	126539