# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	2.36e-11	d.17.4.10	98525
1nwwA	149	2.78e-11	d.17.4.8	86306
1tuhA	156	6.11e-10	d.17.4.11	107345
2bngA	149	1.23e-09		
1ohpA	125	1.23e-08	d.17.4.3	118702
1oh0A	131	1.43e-08	d.17.4.3	87004
1ocvA	125	2.60e-08	d.17.4.3	86810
1dmmA	131	3.64e-08	d.17.4.3	38114
1buqA	125	5.33e-08	d.17.4.3	38111
1ea2A	131	2.20e-07	d.17.4.3	64860
1opy	131	1.10e-06		
1sjwA	144	5.31e-06	d.17.4.9	98899
2geyA	158	2.29e-05		
2a15A	139	9.31e-05	d.17.4.3	125973
2ux0A	143	0.000533		
1m98A	317	0.003623	a.175.1.1,d.17.4.6	78866,78867
2chcA	170	0.003675		
3cu3A	172	0.007805		
3bb9A	148	0.02905		
2rfrA	155	0.03771		
1hkxA	147	0.04005	d.17.4.7	83567
2f86B	143	0.06163		
2r4iA	123	0.1127		
2gxfA	142	0.1303		
2owpA	129	0.2450		
2rgqA	144	0.4460		
3cnxA	170	1.118		
1tp6A	128	1.607	d.17.4.12	107184
3blzA	128	2.820		
3b7cA	122	3.882		
2db1A	118	7.394		
1jkgB	250	9.100	d.17.4.2	66796
1uliB	187	9.655	d.17.4.4	107923
2iorA	235	19.81		
1bco	327	27.57		
1ekqA	272	33.76	c.72.1.2	34941
1dkxA	219	34.80	a.8.4.1,b.130.1.1	90339,90340
2avkA	136	35.68		
1bcoA	327	38.95	b.48.1.1,c.55.3.3	26431,33676
1ounA	127	45.22	d.17.4.2	38090
2b1xB	172	47.00	d.17.4.4	127677
1uf3A	228	48.40	d.159.1.6	99317
1oiaA	95	54.12	d.58.7.1	87051
1on0A	158	56.90	d.108.1.1	87095
1fp3A	402	58.67	a.102.1.3	18842
2hhiA	204	59.94		
2cw9A	194	59.96	d.17.4.13	130920
1nu4A	97	68.02	d.58.7.1	80731
1vqqA	646	68.08	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011
2ov9A	216	68.34		
2hglA	136	70.83		
1dz4A	414	72.15	a.104.1.1	18903
2oemA	413	73.50		
1vlsA	146	76.27	a.24.2.1	16532
1yreA	197	77.93	d.108.1.1	123919
1r4gA	53	79.54	a.8.5.1	96996
1u00A	227	81.51	a.8.4.1,b.130.1.1	112900,112901
1k8vA	40	81.92	j.6.1.1	72182
2gbwB	174	82.15		
2pv7A	298	82.48		
1jb2A	127	83.22	d.17.4.2	71624
1wddA	477	83.55	c.1.14.1,d.58.9.1	114528,114529
2b02A	119	84.00