# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.06e-11	d.17.4.10	98525
1nwwA	149	1.06e-11	d.17.4.8	86306
1tuhA	156	3.35e-10	d.17.4.11	107345
2bngA	149	5.86e-10		
1ohpA	125	7.32e-09	d.17.4.3	118702
1oh0A	131	7.45e-09	d.17.4.3	87004
1ocvA	125	1.75e-08	d.17.4.3	86810
1dmmA	131	1.86e-08	d.17.4.3	38114
1buqA	125	4.22e-08	d.17.4.3	38111
1ea2A	131	1.09e-07	d.17.4.3	64860
1opy	131	6.60e-07		
1sjwA	144	4.51e-06	d.17.4.9	98899
2geyA	158	2.04e-05		
2a15A	139	5.91e-05	d.17.4.3	125973
2ux0A	143	0.000330		
1m98A	317	0.002081	a.175.1.1,d.17.4.6	78866,78867
2chcA	170	0.003858		
3cu3A	172	0.005506		
1hkxA	147	0.02651	d.17.4.7	83567
3bb9A	148	0.02711		
2rfrA	155	0.02752		
2f86B	143	0.03799		
2r4iA	123	0.1045		
2gxfA	142	0.1689		
2owpA	129	0.2247		
2rgqA	144	0.4172		
3cnxA	170	1.033		
1tp6A	128	1.215	d.17.4.12	107184
3blzA	128	3.103		
3b7cA	122	3.189		
2db1A	118	7.122		
1jkgB	250	8.100	d.17.4.2	66796
1uliB	187	10.83	d.17.4.4	107923
2iorA	235	20.85		
1ekqA	272	24.36	c.72.1.2	34941
1bco	327	32.84		
1ounA	127	40.44	d.17.4.2	38090
2avkA	136	40.44		
2b1xB	172	42.29	d.17.4.4	127677
2hhiA	204	43.22		
1dkxA	219	44.53	a.8.4.1,b.130.1.1	90339,90340
1bcoA	327	49.00	b.48.1.1,c.55.3.3	26431,33676
1oiaA	95	49.71	d.58.7.1	87051
2ov9A	216	49.95		
1uf3A	228	54.84	d.159.1.6	99317
2cw9A	194	63.87	d.17.4.13	130920
1nu4A	97	64.92	d.58.7.1	80731
2achA	360	65.16	e.1.1.1	42626
1fp3A	402	65.52	a.102.1.3	18842
1jb2A	127	66.40	d.17.4.2	71624
1u00A	227	68.90	a.8.4.1,b.130.1.1	112900,112901
2hglA	136	69.92		
1vlsA	146	70.82	a.24.2.1	16532
1imvA	398	72.30	e.1.1.1	62591
2b02A	119	73.12		
2gbwB	174	73.43		
1k8vA	40	74.47	j.6.1.1	72182
2oemA	413	76.04		
1r4gA	53	81.78	a.8.5.1	96996
1jmoA	480	83.53	e.1.1.1	77138
1dz4A	414	84.63	a.104.1.1	18903
1vqqA	646	85.09	d.17.4.5,d.175.1.1,e.3.1.1	114009,114010,114011