# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	1.47e-11	d.17.4.10	98525
1nwwA	149	2.12e-10	d.17.4.8	86306
1tuhA	156	1.89e-09	d.17.4.11	107345
2bngA	149	3.40e-09		
1buqA	125	8.53e-09	d.17.4.3	38111
1oh0A	131	1.59e-08	d.17.4.3	87004
1ohpA	125	1.81e-08	d.17.4.3	118702
1ocvA	125	2.93e-08	d.17.4.3	86810
1dmmA	131	8.11e-08	d.17.4.3	38114
1ea2A	131	1.61e-07	d.17.4.3	64860
1opy	131	1.54e-06		
1sjwA	144	1.02e-05	d.17.4.9	98899
2geyA	158	1.75e-05		
2a15A	139	0.000218	d.17.4.3	125973
2chcA	170	0.000785		
2ux0A	143	0.005623		
1m98A	317	0.007934	a.175.1.1,d.17.4.6	78866,78867
3cu3A	172	0.01011		
2gxfA	142	0.02062		
2rfrA	155	0.02073		
3bb9A	148	0.03230		
2rgqA	144	0.1013		
1hkxA	147	0.1496	d.17.4.7	83567
2f86B	143	0.1547		
2r4iA	123	0.2625		
2owpA	129	0.6746		
3cnxA	170	1.476		
1uliB	187	2.065	d.17.4.4	107923
1jkgB	250	3.114	d.17.4.2	66796
3blzA	128	5.253		
2db1A	118	5.532		
1tp6A	128	6.841	d.17.4.12	107184
2b1xB	172	8.002	d.17.4.4	127677
3b7cA	122	12.19		
2gs8A	317	13.21		
2bl0B	145	16.38		
2gbwB	174	20.60		
1dkxA	219	21.55	a.8.4.1,b.130.1.1	90339,90340
1wfdA	93	25.68	a.7.14.1	114578
2hglA	136	29.91		
2ckfB	174	34.14		
1ounA	127	41.62	d.17.4.2	38090
2imjA	166	48.64		
2hkeA	380	54.20		
1b79A	119	60.18	a.81.1.1	18451
1qwgA	251	62.07	c.1.27.1	96473
1fi4A	416	63.93	d.14.1.5,d.58.26.2	59847,59848
1jfbA	404	64.05	a.104.1.1	66624
1f24A	402	64.09	a.104.1.1	18953
1nu4A	97	65.68	d.58.7.1	80731
1wt4A	73	66.61		
1oiaA	95	66.64	d.58.7.1	87051
1u00A	227	66.99	a.8.4.1,b.130.1.1	112900,112901
1odoA	408	69.14	a.104.1.1	92783
2frvB	536	69.22	e.18.1.1	43291
1dd9A	338	69.32	e.13.1.1	43254
1g5tA	196	69.75	c.37.1.11	32366
1jweA	114	72.65	a.81.1.1	18455
1zo2A	129	74.11		
2oayA	391	74.40		
1askA	127	74.52	d.17.4.2	38094
2blfB	81	76.18		
1dkzA	219	77.27	a.8.4.1,b.130.1.1	90345,90346
1jb2A	127	80.15	d.17.4.2	71624
1ayoA	130	80.44	b.2.4.1	22431
2achA	360	81.08	e.1.1.1	42626
1l3kA	196	83.52	d.58.7.1,d.58.7.1	73539,73540
1pbyB	337	85.30	b.69.2.2	94422