# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	3.05e-11	d.17.4.8	86306
1s5aA	150	4.96e-11	d.17.4.10	98525
1tuhA	156	5.13e-11	d.17.4.11	107345
2bngA	149	8.23e-10		
1oh0A	131	7.34e-09	d.17.4.3	87004
1ohpA	125	7.53e-09	d.17.4.3	118702
1dmmA	131	1.63e-08	d.17.4.3	38114
1ocvA	125	1.73e-08	d.17.4.3	86810
1ea2A	131	3.29e-08	d.17.4.3	64860
1buqA	125	8.62e-08	d.17.4.3	38111
1opy	131	6.17e-07		
1sjwA	144	3.71e-06	d.17.4.9	98899
2geyA	158	7.13e-06		
2ux0A	143	2.73e-05		
2a15A	139	4.65e-05	d.17.4.3	125973
1m98A	317	0.000218	a.175.1.1,d.17.4.6	78866,78867
3cu3A	172	0.000346		
2chcA	170	0.001439		
1hkxA	147	0.01344	d.17.4.7	83567
2gxfA	142	0.01488		
3bb9A	148	0.01678		
2f86B	143	0.02323		
2r4iA	123	0.09582		
2rgqA	144	0.2434		
2owpA	129	0.3667		
2rfrA	155	0.3767		
3cnxA	170	0.5684		
1tp6A	128	0.7911	d.17.4.12	107184
2hhiA	204	0.9730		
2db1A	118	1.053		
1askA	127	1.866	d.17.4.2	38094
3blzA	128	2.037		
3b7cA	122	2.830		
1ounA	127	2.993	d.17.4.2	38090
1uliB	187	4.529	d.17.4.4	107923
2bl0C	142	5.499		
2admA	421	5.705	c.66.1.27,d.287.1.1	111611,111612
1v5vA	401	6.043	b.44.2.1,d.250.1.1	113539,113540
2hi2A	158	6.915		
2pnqA	467	7.345		
1jkgB	250	7.855	d.17.4.2	66796
1hq0A	295	8.134	d.194.1.1	61122
1olzA	663	11.93	b.1.1.4,b.69.12.1,g.16.2.1	93341,93342,93343
1a8rA	221	13.01	d.96.1.1	40587
1jb2A	127	14.49	d.17.4.2	71624
2qiyA	154	15.18		
2pftA	571	15.47		
2ov9A	216	16.33		
1htrB	329	16.44		
1gy6A	127	17.01	d.17.4.2	70736
1pbyB	337	18.61	b.69.2.2	94422
1bco	327	19.74		
2b1xB	172	20.57	d.17.4.4	127677
1aszB	490	20.98	b.40.4.1,d.104.1.1	25241,40762
1k7hA	476	21.24	c.76.1.1	72101
2gv5A	161	22.91		
1o5zA	442	23.43	c.59.1.2,c.72.2.2	92530,92531
2o8nA	265	25.39		
2cw9A	194	25.76	d.17.4.13	130920
1ew2A	513	26.88	c.76.1.1	59525
1fp3A	402	27.59	a.102.1.3	18842
1y08A	323	29.53	d.3.1.12	116280
1auiA	521	29.98	d.159.1.3	42085
2gbwB	174	31.00		
1n9eA	787	31.43	b.30.2.1,d.17.2.1,d.17.2.1	91708,91709,91710
1l3kA	196	33.76	d.58.7.1,d.58.7.1	73539,73540
1jjoC	261	34.81		
1xkyA	301	35.88	c.1.10.1	122094
1wddA	477	36.17	c.1.14.1,d.58.9.1	114528,114529
1imvA	398	37.65	e.1.1.1	62591
1e4eA	343	38.70	c.30.1.2,d.142.1.1	59221,59222
1hzgA	295	39.69	d.194.1.1	61436
2ff4A	388	40.57	a.4.6.1,a.118.8.3,b.26.1.2	133367,133368,133369
1b7fA	168	41.71	d.58.7.1,d.58.7.1	39169,39170
2z3yA	662	43.14		
1ar0A	127	45.51	d.17.4.2	38092
2qalC	232	46.89		
1reqB	637	49.08	c.1.19.1,c.23.6.1	29621,31248
2ckfB	174	50.41		
1b8aA	438	51.06	b.40.4.1,d.104.1.1	25244,40765
2avkA	136	53.15		
1zgsA	447	53.71		
2cdcA	366	53.97		
2avwA	311	58.90		
2iorA	235	59.64		
2cmzA	423	59.66		
1ha1	184	60.08		
2pv2A	103	61.07		
1ggzA	148	61.54	a.39.1.5	70176
2jynA	146	61.59		
2qguA	211	63.41		
1s95A	333	63.98	d.159.1.3	105375
2hglA	136	65.48		
1h49A	512	69.95	c.1.8.4	83477
2o5gA	148	70.52		
1sqjA	789	71.63	b.69.13.1,b.69.13.1	105918,105919
1as4A	341	72.38	e.1.1.1	42623
1p2fA	220	73.78	a.4.6.1,c.23.1.1	87720,87721
1fxlA	167	77.34	d.58.7.1,d.58.7.1	39183,39184
1mwsA	646	79.68	d.17.4.5,d.175.1.1,e.3.1.1	79592,79593,79594
1h2vZ	156	81.43	d.58.7.1	76595
1q35A	320	82.87	c.94.1.1	95661
1mtzA	293	84.64	c.69.1.7	79467
3bvrA	383	84.87		
3c25A	383	84.87		
1qxoA	388	86.04	d.258.1.1	96539
1enfA	212	88.30	b.40.2.2,d.15.6.1	25198,37787
2heuA	401	88.54		
1zo2A	129	88.54		
3buuA	229	88.98		
2htuA	390	89.29