# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1s5aA	150	7.00e-11	d.17.4.10	98525
1nwwA	149	1.51e-10	d.17.4.8	86306
1tuhA	156	2.15e-09	d.17.4.11	107345
2bngA	149	5.86e-09		
1ohpA	125	3.69e-08	d.17.4.3	118702
1oh0A	131	4.49e-08	d.17.4.3	87004
1ocvA	125	5.22e-08	d.17.4.3	86810
1dmmA	131	8.92e-08	d.17.4.3	38114
1buqA	125	1.71e-07	d.17.4.3	38111
1ea2A	131	5.97e-07	d.17.4.3	64860
1opy	131	2.74e-06		
1sjwA	144	1.53e-05	d.17.4.9	98899
2geyA	158	2.88e-05		
2a15A	139	0.000180	d.17.4.3	125973
2ux0A	143	0.001017		
2chcA	170	0.004300		
3cu3A	172	0.009496		
1m98A	317	0.02885	a.175.1.1,d.17.4.6	78866,78867
3bb9A	148	0.03202		
1hkxA	147	0.05069	d.17.4.7	83567
2f86B	143	0.05737		
2rfrA	155	0.09676		
2gxfA	142	0.1190		
2r4iA	123	0.1693		
2rgqA	144	0.4612		
2owpA	129	0.4729		
3cnxA	170	1.341		
1tp6A	128	1.481	d.17.4.12	107184
3blzA	128	2.313		
2db1A	118	4.303		
1uliB	187	6.933	d.17.4.4	107923
3b7cA	122	7.949		
1jkgB	250	8.335	d.17.4.2	66796
2b1xB	172	19.11	d.17.4.4	127677
1bco	327	20.44		
1bcoA	327	24.05	b.48.1.1,c.55.3.3	26431,33676
1ekqA	272	24.82	c.72.1.2	34941
2iorA	235	37.48		
2gbwB	174	41.59		
1ounA	127	46.90	d.17.4.2	38090
1dkxA	219	48.78	a.8.4.1,b.130.1.1	90339,90340
2hglA	136	51.97		
2ckfB	174	52.50		
1k8vA	40	61.11	j.6.1.1	72182
2hhiA	204	63.27		
1imvA	398	65.75	e.1.1.1	62591
1svdA	473	70.14	c.1.14.1,d.58.9.1	119057,119058
1jb2A	127	71.79	d.17.4.2	71624
2oemA	413	72.33		
1fp3A	402	78.88	a.102.1.3	18842
2ov9A	216	80.15		
2cw9A	194	84.00	d.17.4.13	130920
2b02A	119	84.25		
1l3kA	196	89.63	d.58.7.1,d.58.7.1	73539,73540