# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1nwwA	149	1.91e-11	d.17.4.8	86306
1s5aA	150	2.47e-11	d.17.4.10	98525
1tuhA	156	5.06e-10	d.17.4.11	107345
2bngA	149	3.28e-09		
1buqA	125	8.83e-09	d.17.4.3	38111
1ohpA	125	1.78e-08	d.17.4.3	118702
1oh0A	131	1.82e-08	d.17.4.3	87004
1ocvA	125	2.55e-08	d.17.4.3	86810
1dmmA	131	4.46e-08	d.17.4.3	38114
1ea2A	131	2.62e-07	d.17.4.3	64860
1opy	131	1.99e-06		
1sjwA	144	1.14e-05	d.17.4.9	98899
2geyA	158	5.17e-05		
2a15A	139	6.95e-05	d.17.4.3	125973
2ux0A	143	0.000913		
2chcA	170	0.008808		
3cu3A	172	0.01024		
3bb9A	148	0.02564		
1m98A	317	0.02649	a.175.1.1,d.17.4.6	78866,78867
1hkxA	147	0.04923	d.17.4.7	83567
2rfrA	155	0.05448		
2f86B	143	0.05876		
2r4iA	123	0.1747		
2gxfA	142	0.2187		
2owpA	129	0.4615		
2rgqA	144	0.8873		
3cnxA	170	2.151		
3blzA	128	3.086		
1tp6A	128	3.327	d.17.4.12	107184
2db1A	118	5.795		
3b7cA	122	7.667		
1jkgB	250	10.97	d.17.4.2	66796
1uliB	187	18.45	d.17.4.4	107923
2iorA	235	23.90		
1bco	327	34.02		
2hglA	136	39.34		
1bcoA	327	42.40	b.48.1.1,c.55.3.3	26431,33676
2ov9A	216	48.47		
2hhiA	204	56.48		
2cw9A	194	58.00	d.17.4.13	130920
1ekqA	272	65.17	c.72.1.2	34941
1ounA	127	67.71	d.17.4.2	38090
2b1xB	172	71.19	d.17.4.4	127677
2hzcA	87	82.24		
1u2fA	90	87.30	d.58.7.1	39168
2avkA	136	87.37		
1oiaA	95	87.70	d.58.7.1	87051
1k8vA	40	89.91	j.6.1.1	72182